Factsheet for Os10t0437600-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G01180.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01182	Soybean	cytosol	27.5	77.44
TraesCS1B01G155700.3	Wheat	plastid	72.9	73.49
CDY34695	Canola	plastid	14.02	73.43
TraesCS1A01G137200.1	Wheat	plastid	73.43	73.24
TraesCS1D01G138100.2	Wheat	plastid	72.76	72.57
OQU91730	Sorghum	cytosol	64.49	70.61
Zm00001d014150_P005	Maize	plastid	71.16	68.86
HORVU1Hr1G035960.19	Barley	cytosol, plastid	72.9	68.0
Bra021486.1-P	Field mustard	endoplasmic reticulum	18.83	66.82
CDY43274	Canola	plastid	56.21	60.32
CDY37538	Canola	plastid	54.34	60.12
GSMUA_Achr6P23190_001	Banana	cytosol	56.48	58.1
Os02t0744700-01	Rice	nucleus	51.13	56.57
KRH18473	Soybean	plastid	56.34	54.38
KRG93537	Soybean	plastid	55.94	54.13
VIT_14s0108g00940.t01	Wine grape	plastid	57.54	53.88
PGSC0003DMT400003356	Potato	cytosol	54.74	53.45
Solyc02g088000.2.1	Tomato	nucleus, plastid	54.61	53.26
GSMUA_Achr1P24650_001	Banana	mitochondrion	55.67	52.92
Bra039138.1-P	Field mustard	plastid	54.47	52.92
AT3G01180.1	Thale cress	plastid	55.27	52.27
Os06t0229800-01	Rice	plastid	50.73	46.91
CDY55806	Canola	plastid	34.58	46.84
KRH15937	Soybean	plastid	8.01	46.15
Bra021487.1-P	Field mustard	cytosol	20.03	40.43
Os06t0160700-01	Rice	plastid	33.64	39.31
CDY34693	Canola	endoplasmic reticulum, golgi	19.09	35.93
Os06t0133000-02	Rice	plastid	27.64	33.99
Os07t0412100-01	Rice	plastid	26.84	33.06
Os05t0533600-02	Rice	plastid	21.36	17.41
Os01t0720600-01	Rice	plastid	22.3	17.13
Os04t0624600-01	Rice	plastid	22.56	13.9
Os08t0191433-01	Rice	plastid	20.29	9.79
Os02t0807100-01	Rice	plastid	3.34	8.06

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	EntrezGene:4348711	ProteinID:ABG66094.1	ProteinID:ACY56171.1
ProteinID:ACY56173.1	ProteinID:ACY56175.1	EMBL:AF383878	ProteinID:AII21925.1	ProteinID:BAF26592.1	ProteinID:BAT11006.1
UniProt:D0TZN5	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	GO:GO:0033201	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484
EnsemblPlantsGene:Os10g0437600	EnsemblPlants:Os10t0437600-00	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542
UniProt:Q7XE48	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00005767EB	RefSeq:XP_015614561.1
SEG:seg	:	:	:	:	:

Description

SOLUBLE STARCH SYNTHASE IICSimilar to Starch synthase II, chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II). (Os10t0437600-00)

Coordinates

chr10:+:15673243..15681075

Molecular Weight (calculated)

83316.9 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.287

Length

749 amino acids

Sequence
(BLAST)

001: MAAAAVSSLL APSGSCYSPG CHSCWGPGPG GGRRLPSPRR RPITAAARPT WAVPRRSRLE WGRVEAQNSG ARTSCRAALQ WLSSTARSHV NVGYGSPLVF
101: PGLTKPGSSR CLCVVGMVGN AGNQVGDDSD DGIKVTNEKL RAVIRKSKEV LEIHRNLLEK ISASERKKIT SIIEDSSIYN EQDPFGQRDS SFYHLDEVPD
201: DDEFSYDLQM YLDRRPDQSE VVATQDYEAQ LSQISEMGQS VAEGTSDDPS ASAAVDLINI ILVAAECAPW SKTGGLGDVA GALPKALARR GHRVMVVVPM
301: YKNYAEPQQL GEPRRYQVAG QDMEVIYYHA YIDGVDFVFI DNPIFHHVEN DIYGGDRTDI LKRMVLLCKA AIEVPWYVPC GGYCYGDGNL VFLANDWHTA
401: LLPVYLKAYY HDNGFMIYAR SVLVIHNIAH QGRGPLDDFS YLDLPVDYMD LFKLYDPFGG DHLNIFAAGI KAADRLLTVS HGYAWELKTA EGGWGLHGII
501: NESDWKFQGI VNGIDTTDWN PRCDIHLKSD GYTNYSLETV QAGKQQCKAA LQKELGLPVR GDVPVIAFIG RLDHQKGVDL IAEAMPWIAG QDVQLIMLGT
601: GRQDLEDTLR RLESQHYDRV RGWVGFSIRL AHRMTAGADI LLMPSRFEPC GLNQLYAMMY GTVPVVHAVG GLRDTVEHYN PYEESGLGWT FEKAEANRLI
701: DALGHCLNTY RNYRTSWEGL QKRGMMQDLS WDNAAKLYEE VLLAAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.