Factsheet for Os06t0160700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G018600.1	Wheat	cytosol	73.79	90.79
HORVU7Hr1G025390.4	Barley	cytosol, plastid	79.56	88.7
Zm00001d045261_P006	Maize	plastid	76.6	87.68
TraesCS7A01G120300.1	Wheat	plastid	83.93	83.54
TraesCS7D01G117800.1	Wheat	plastid	83.78	81.98
KXG19354	Sorghum	plastid	82.68	81.92
VIT_16s0098g01780.t01	Wine grape	plastid	62.4	63.19
AT5G24300.1	Thale cress	plastid	61.31	60.28
Solyc03g083090.2.1	Tomato	plastid	60.06	60.06
KRH64431	Soybean	plastid	60.69	59.75
KRH53506	Soybean	plastid	58.97	59.62
PGSC0003DMT400047731	Potato	plastid	59.28	59.28
Bra009747.1-P	Field mustard	plastid	60.06	59.14
CDX88091	Canola	plastid	60.06	59.14
CDX80428	Canola	plastid	59.91	58.99
GSMUA_Achr3P03290_001	Banana	plastid	62.4	57.89
KRH16258	Soybean	extracellular	11.39	53.68
Os02t0744700-01	Rice	nucleus	38.38	36.34
Os10t0437600-00	Rice	plastid	39.31	33.64
Os06t0133000-02	Rice	plastid	31.51	33.17
Os06t0229800-01	Rice	plastid	40.25	31.85
Os07t0412100-01	Rice	plastid	28.39	29.93
Os05t0533600-02	Rice	plastid	25.59	17.85
Os01t0720600-01	Rice	plastid	26.99	17.74
Os04t0624600-01	Rice	plastid	24.18	12.75
Os02t0807100-01	Rice	plastid	4.84	10.0
Os08t0191433-01	Rice	plastid	23.71	9.79

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	EntrezGene:9269493	ProteinID:ACY56156.1	ProteinID:ACY56157.1
ProteinID:ACY56158.1	ProteinID:ACY56159.1	ProteinID:ACY56160.1	ProteinID:ACY56161.1	EMBL:AF165890	EMBL:AK109458
UniProt:B7F2B2	ProteinID:BAA07396.1	ProteinID:BAD67625.1	ProteinID:BAF18795.1	ProteinID:BAS96282.1	EMBL:D16202
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010021
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	GO:GO:0033201	InterPro:GS/SS	InterPro:Glyco_trans_1
HAMAP:MF_00484	EnsemblPlantsGene:Os06g0160700	EnsemblPlants:Os06t0160700-01	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF431	UniProt:Q0DEC8	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0000457932
RefSeq:XP_015644241.1	SEG:seg	:	:	:	:

Description

SOLUBLE STARCH SYNTHASE IStarch synthase, Starch biosynthesis (Os06t0160700-01)

Coordinates

chr6:-:3079296..3086808

Molecular Weight (calculated)

70955.9 Da

IEP (calculated)

6.244

GRAVY (calculated)

-0.185

Length

641 amino acids

Sequence
(BLAST)

001: MATAAGMGIG AACLVAPQVR PGRRLRLQRV RRRCVAELSR DGGSAQRPLA PAPLVKQPVL PTFLVPTSTP PAPTQSPAPA PTPPPLPDSG VGEIEPDLEG
101: LTEDSIDKTI FVASEQESEI MDVKEQAQAK VTRSVVFVTG EASPYAKSGG LGDVCGSLPI ALALRGHRVM VVMPRYMNGA LNKNFANAFY TEKHIKIPCF
201: GGEHEVTFFH EYRDSVDWVF VDHPSYHRPG NLYGDNFGAF GDNQFRYTLL CYAACEAPLI LELGGYIYGQ KCMFVVNDWH ASLVPVLLAA KYRPYGVYRD
301: ARSVLVIHNL AHQGVEPAST YPDLGLPPEW YGALEWVFPE WARRHALDKG EAVNFLKGAV VTADRIVTVS QGYSWEVTTA EGGQGLNELL SSRKSVLNGI
401: VNGIDINDWN PSTDKFLPYH YSVDDLSGKA KCKAELQKEL GLPIRPDVPL IGFIGRLDYQ KGIDLIKLAI PDLMRDNIQF VMLGSGDPGF EGWMRSTESG
501: YRDKFRGWVG FSVPVSHRIT AGCDILLMPS RFEPCGLNQL YAMQYGTVPV VHGTGGLRDT VENFNPFAEK GEQGTGWAFS PLTIEKMLWA LRMAISTYRE
601: HKSSWEGLMK RGMSSDFTWD HAASQYEQIF EWAFMDQPYV M

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.