Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009747.1-P | Field mustard | plastid | 89.57 | 89.71 |
| CDX88091 | Canola | plastid | 89.57 | 89.71 |
| CDX80428 | Canola | plastid | 88.96 | 89.09 |
| TraesCS7B01G018600.1 | Wheat | cytosol | 56.75 | 71.02 |
| Zm00001d045261_P006 | Maize | plastid | 58.9 | 68.57 |
| VIT_16s0098g01780.t01 | Wine grape | plastid | 66.41 | 68.4 |
| PGSC0003DMT400047731 | Potato | plastid | 65.18 | 66.3 |
| Solyc03g083090.2.1 | Tomato | plastid | 64.88 | 65.99 |
| KRH53506 | Soybean | plastid | 63.5 | 65.3 |
| HORVU7Hr1G025390.4 | Barley | cytosol, plastid | 57.52 | 65.22 |
| KRH64431 | Soybean | plastid | 64.57 | 64.67 |
| Os06t0160700-01 | Rice | plastid | 60.28 | 61.31 |
| KXG19354 | Sorghum | plastid | 60.12 | 60.59 |
| TraesCS7A01G120300.1 | Wheat | plastid | 58.9 | 59.63 |
| TraesCS7D01G117800.1 | Wheat | plastid | 59.05 | 58.78 |
| GSMUA_Achr3P03290_001 | Banana | plastid | 59.97 | 56.58 |
| KRH16258 | Soybean | extracellular | 11.04 | 52.94 |
| AT1G32900.1 | Thale cress | plastid | 32.98 | 35.25 |
| AT3G01180.1 | Thale cress | plastid | 41.41 | 34.09 |
| AT4G18240.1 | Thale cress | plastid | 25.15 | 15.77 |
| AT1G11720.2 | Thale cress | mitochondrion, plastid | 24.69 | 14.72 |
| AT5G65685.5 | Thale cress | extracellular, golgi | 8.28 | 10.69 |
Protein Annotations
| KEGG:00500+2.4.1.21 | MapMan:3.2.2.4.1 | Gene3D:3.40.50.2000 | EntrezGene:832497 | ProteinID:AAF24126.1 | ProteinID:AED93282.1 |
| ProteinID:AED93283.1 | EMBL:AK226881 | ArrayExpress:AT5G24300 | EnsemblPlantsGene:AT5G24300 | RefSeq:AT5G24300 | TAIR:AT5G24300 |
| RefSeq:AT5G24300-TAIR-G | EnsemblPlants:AT5G24300.1 | TAIR:AT5G24300.1 | EMBL:AY128273 | Unigene:At.22528 | ProteinID:BAB10396.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009011 | GO:GO:0009058 |
| GO:GO:0009501 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0010021 |
| GO:GO:0016740 | GO:GO:0016757 | GO:GO:0019252 | GO:GO:0033201 | InterPro:GS/SS | InterPro:Glyco_trans_1 |
| EMBL:KJ138668 | HAMAP:MF_00484 | RefSeq:NP_001190378.1 | RefSeq:NP_197818.1 | PFAM:PF00534 | PFAM:PF08323 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007006 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12526 |
| PANTHER:PTHR12526:SF431 | UniProt:Q9FNF2 | SUPFAM:SSF53756 | Symbol:SSI1 | InterPro:Starch_synth_cat_dom | TIGRFAMs:TIGR02095 |
| UniParc:UPI0000048BA3 | UniProt:W8QN76 | SEG:seg | : | : | : |
Description
SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
Coordinates
chr5:+:8266566..8271196
Molecular Weight (calculated)
72102.5 Da
IEP (calculated)
6.414
GRAVY (calculated)
-0.234
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.