Factsheet for PGSC0003DMT400047731

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083090.2.1	Tomato	plastid	97.19	97.19
TraesCS7B01G018600.1	Wheat	cytosol	57.1	70.25
Zm00001d045261_P006	Maize	plastid	59.44	68.04
VIT_16s0098g01780.t01	Wine grape	plastid	66.15	66.98
AT5G24300.1	Thale cress	plastid	66.3	65.18
HORVU7Hr1G025390.4	Barley	cytosol, plastid	58.03	64.7
KRH64431	Soybean	plastid	65.52	64.52
KRH53506	Soybean	plastid	63.81	64.51
Bra009747.1-P	Field mustard	plastid	64.74	63.75
CDX88091	Canola	plastid	64.74	63.75
CDX80428	Canola	plastid	64.27	63.29
KXG19354	Sorghum	plastid	59.91	59.35
Os06t0160700-01	Rice	plastid	59.28	59.28
TraesCS7A01G120300.1	Wheat	plastid	59.28	59.01
TraesCS7D01G117800.1	Wheat	plastid	59.59	58.32
GSMUA_Achr3P03290_001	Banana	plastid	59.75	55.43
KRH16258	Soybean	extracellular	11.39	53.68
PGSC0003DMT400031568	Potato	plastid	34.01	35.91
PGSC0003DMT400003356	Potato	cytosol	41.19	34.42
PGSC0003DMT400035217	Potato	plastid	11.39	21.41
PGSC0003DMT400035218	Potato	plastid	12.64	19.66
PGSC0003DMT400078688	Potato	cytosol	11.86	19.49
PGSC0003DMT400021444	Potato	plastid	26.83	17.18

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:102600045	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	ProteinID:CAA71442	ProteinID:CAA71442.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010021
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	GO:GO:0033201	InterPro:GS/SS	InterPro:Glyco_trans_1
UniProt:M1BLC3	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	EnsemblPlantsGene:PGSC0003DMG402018552	PGSC:PGSC0003DMG402018552
EnsemblPlants:PGSC0003DMT400047731	PANTHER:PTHR12526	PANTHER:PTHR12526:SF431	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0002949BF6	RefSeq:XP_006350536.1	EMBL:Y10416	:	:	:

Description

Soluble starch synthase 1, chloroplastic/amyloplastic [Source:PGSC_GENE;Acc:PGSC0003DMG402018552]

Coordinates

chr3:-:48221882..48230897

Molecular Weight (calculated)

70612.8 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.180

Length

641 amino acids

Sequence
(BLAST)

001: MGSLQTPTNL SNKSCLCVSG RVVRGLRVER QVGLGFSWLL KGRRNRKVQS LCVTSSVSDG SSIAENKKVS EGLLLGAERD GSGSVVGFQL IPHSVAGDAT
101: MVESHDIVAN DRDDLSEDTE EMEETPIKLT FNIIFVTAEA APYSKTGGLG DVCGSLPMAL AARGHRVMVV SPRYLNGGPS DEKYANAVDL DVRATVHCFG
201: DAQEVAFYHE YRAGVDWVFV DHSSYCRPGT PYGDIYGAFG DNQFRFTLLS HAACEAPLVL PLGGFTYGEK CLFLANDWHA ALVPLLLAAK YRPYGVYKDA
301: RSIVAIHNIA HQGVEPAVTY NNLGLPPQWY GAVEWIFPTW ARAHALDTGE TVNVLKGAIA VADRILTVSQ GYSWEITTPE GGYGLHELLS SRQSVLNGIT
401: NGIDVNDWNP STDEHIASHY SINDLSGKVQ CKTDLQKELG LPIRPDCPLI GFIGRLDYQK GVDIILSAIP ELMQNDVQVV MLGSGEKQYE DWMRHTENLF
501: KDKFRAWVGF NVPVSHRITA GCDILLMPSR FEPCGLNQLY AMRYGTIPIV HSTGGLRDTV KDFNPYAQEG NGEGTGWTFS PLTSEKLLDT LKLAIGTYTE
601: HKSSWEGLMK RGMGRDYSWE NAAVQYEQVF TWAFIDPPYV R

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.