Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g042830.2.1 | Tomato | plastid | 62.46 | 34.69 |
| VIT_11s0065g00150.t01 | Wine grape | plastid | 53.08 | 29.92 |
| PGSC0003DMT400031568 | Potato | plastid | 20.82 | 11.7 |
| PGSC0003DMT400047731 | Potato | plastid | 21.41 | 11.39 |
| PGSC0003DMT400021444 | Potato | plastid | 33.14 | 11.29 |
| PGSC0003DMT400003356 | Potato | cytosol | 21.41 | 9.52 |
| PGSC0003DMT400078688 | Potato | cytosol | 5.28 | 4.62 |
| PGSC0003DMT400035218 | Potato | plastid | 4.11 | 3.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035217 | EnsemblPlantsGene:PGSC0003DMG401013540 | Gene3D:3.40.50.2000 | InterPro:Glyco_trans_1 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF539 |
| PFAM:PF00534 | PGSC:PGSC0003DMG401013540 | SUPFAM:SSF53756 | UniParc:UPI000296D33B | UniProt:M1B1Z9 | MapMan:35.1 |
Description
Starch synthase VI [Source:PGSC_GENE;Acc:PGSC0003DMG401013540]
Coordinates
chr7:-:40921626..40927720
Molecular Weight (calculated)
38859.7 Da
IEP (calculated)
6.696
GRAVY (calculated)
-0.344
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDISSPSFLF RVCVFEASKT EGKRICKQFV QRGLGLPFQG IKHGICVADQ IPLVVCITRL VAQKGLHLIT HAIKHVEELG GQMVVLGRAS DDRVEREFEG
101: LAELHNKGSN IRILLMYSEE LSHMLYAAAD MILVPSMYEP CGLAQMIGMR YGAVPIVRKT GGLADTVFDM DDQSHTEIAN GFVFEGIDEG SLNCALGRAF
201: SYYQEKPNEW KAVVQKVMRI DNSWNNTAGK YIDIYNSKFQ KDDIHIELVR MRTTKKEQDE AYSKFQEEAH GCLNQESRLE CSNSRLLVIL TNEKIPIQHP
301: LTNNHHHPRY SEKQERPCLK SVDYNVLTAF EKLKEWNDFN T
101: LAELHNKGSN IRILLMYSEE LSHMLYAAAD MILVPSMYEP CGLAQMIGMR YGAVPIVRKT GGLADTVFDM DDQSHTEIAN GFVFEGIDEG SLNCALGRAF
201: SYYQEKPNEW KAVVQKVMRI DNSWNNTAGK YIDIYNSKFQ KDDIHIELVR MRTTKKEQDE AYSKFQEEAH GCLNQESRLE CSNSRLLVIL TNEKIPIQHP
301: LTNNHHHPRY SEKQERPCLK SVDYNVLTAF EKLKEWNDFN T
0001: MEVCWQIQRP ASLRPGFQEK GRVKINTFSV GFFPRSISSI ASLESQYKSN GFLHQITASA DFSRKKQGRM AASGPKSSGP RGFGRRTTVG SAQKRTQKKN
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK
Arabidopsis Description
ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.