Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g042830.2.1 | Tomato | plastid | 94.42 | 63.35 |
| VIT_11s0065g00150.t01 | Wine grape | plastid | 61.89 | 42.15 |
| PGSC0003DMT400078688 | Potato | cytosol | 21.6 | 22.82 |
| PGSC0003DMT400047731 | Potato | plastid | 19.66 | 12.64 |
| PGSC0003DMT400021444 | Potato | plastid | 30.58 | 12.59 |
| PGSC0003DMT400031568 | Potato | plastid | 18.45 | 12.52 |
| PGSC0003DMT400003356 | Potato | cytosol | 22.82 | 12.26 |
| PGSC0003DMT400035217 | Potato | plastid | 3.4 | 4.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035218 | EnsemblPlantsGene:PGSC0003DMG402013540 | Gene3D:3.40.50.2000 | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 | PANTHER:PTHR12526 |
| PANTHER:PTHR12526:SF539 | PFAM:PF08323 | PGSC:PGSC0003DMG402013540 | SEG:seg | SUPFAM:SSF53756 | UniParc:UPI000296BF73 |
| UniProt:M1B200 | MapMan:35.1 | : | : | : | : |
Description
Starch synthase VI [Source:PGSC_GENE;Acc:PGSC0003DMG402013540]
Coordinates
chr7:-:40932630..40939876
Molecular Weight (calculated)
46329.9 Da
IEP (calculated)
6.387
GRAVY (calculated)
-0.307
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFTSGLSFP SSLAPNGNCS SNNNCSSSFN HRSCYNNISS KANLLKKQSY VFSKYQLRNF KIRRVPRIEA QLKAEQLESS EAGCESDGLQ WPSPNDEIPF
101: WKGDFPSWDL SSDASAGVEQ DSDLLHIVHV TAEMAPIAKV GGLGDVVTGL GRACLNRGHK VDVMIPFYEC IPKHCINELA LMKTYNSYHD GNWVACKAYR
201: GEVSGVPVIL IEPSNHFFKG KNIYGGSYNE LDAYLFFSRA CLEWMQVNGT QPDIIHVHEW QTGALPLFYW DMYHFLSLQK PRIVLTIHNM EHYGECRQEQ
301: LSKFGLDGSA YATEDKAVDD RTVGHNPERL SLLKGGIVYS NAIVTVSPTY LKETLCSGWL SGALMRNRDK YSGILNGIDT EMWNPATDIY LPAKFDGNYF
401: CDVVEVLRRH LL
101: WKGDFPSWDL SSDASAGVEQ DSDLLHIVHV TAEMAPIAKV GGLGDVVTGL GRACLNRGHK VDVMIPFYEC IPKHCINELA LMKTYNSYHD GNWVACKAYR
201: GEVSGVPVIL IEPSNHFFKG KNIYGGSYNE LDAYLFFSRA CLEWMQVNGT QPDIIHVHEW QTGALPLFYW DMYHFLSLQK PRIVLTIHNM EHYGECRQEQ
301: LSKFGLDGSA YATEDKAVDD RTVGHNPERL SLLKGGIVYS NAIVTVSPTY LKETLCSGWL SGALMRNRDK YSGILNGIDT EMWNPATDIY LPAKFDGNYF
401: CDVVEVLRRH LL
001: MILNKQRLAA VDELEQLKKD KEELLERINQ LEAESQIVIK KDKSSLFWEL LLRIDSMVIN GLVNIEEASS MRKLVKEHEA NISVFPLDVL QQGDAEILAE
101: LRRFTNKGKR NGLHVIHICT EMAPLVSVGP LASYITGLSC ALQEEGYMVE VILPKYSTLD LDEIEGLREI EADAYSYFDG QLHANRIWNG VVSGIGVTLI
201: QPVYYSSMFS RDKVYGYQDD FDRFAYFSRA SLDYIAKSGK QPDVLHIHNW QTAIVGPLFW DVFVNQGLEG TRILLTCQDF DKGLVPPEKL ELCGLDPAEL
301: HRLDRLQDNT NPHFVNILKG GVVYSNKVVI MSSSHSSIPG LEPTLAIHKD KLFFAPFGMD NSMEKDLCCD LHVSAYTSIK NL
101: LRRFTNKGKR NGLHVIHICT EMAPLVSVGP LASYITGLSC ALQEEGYMVE VILPKYSTLD LDEIEGLREI EADAYSYFDG QLHANRIWNG VVSGIGVTLI
201: QPVYYSSMFS RDKVYGYQDD FDRFAYFSRA SLDYIAKSGK QPDVLHIHNW QTAIVGPLFW DVFVNQGLEG TRILLTCQDF DKGLVPPEKL ELCGLDPAEL
301: HRLDRLQDNT NPHFVNILKG GVVYSNKVVI MSSSHSSIPG LEPTLAIHKD KLFFAPFGMD NSMEKDLCCD LHVSAYTSIK NL
Arabidopsis Description
UDP-Glycosyltransferase superfamily protein [Source:TAIR;Acc:AT5G65685]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.