Factsheet for PGSC0003DMT400021444

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071040.2.1	Tomato	nucleus	95.5	95.5
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	15.98	72.4
KRH58438	Soybean	nucleus	65.83	66.63
VIT_10s0003g02880.t01	Wine grape	plastid	66.63	65.97
KRH42312	Soybean	nucleus	65.13	65.86
TraesCS1A01G353300.1	Wheat	cytosol	43.26	63.12
Bra021017.1-P	Field mustard	plastid	63.14	61.96
CDX76534	Canola	plastid	63.04	61.86
GSMUA_Achr8P27560_001	Banana	plastid	57.64	61.38
CDY08902	Canola	plastid	62.34	61.18
AT4G18240.1	Thale cress	plastid	63.54	61.15
GSMUA_Achr3P16340_001	Banana	plastid	42.16	57.57
OQU78343	Sorghum	plastid	51.95	57.21
Os05t0533600-02	Rice	plastid	52.45	57.13
TraesCS1D01G356900.1	Wheat	plastid	51.75	56.74
TraesCS1B01G368500.1	Wheat	plastid	51.65	56.63
Zm00001d010821_P002	Maize	plastid	51.15	56.33
HORVU1Hr1G080950.5	Barley	plastid	52.05	54.5
Os01t0720600-01	Rice	plastid	51.55	52.92
PGSC0003DMT400078688	Potato	cytosol	14.29	36.67
PGSC0003DMT400035217	Potato	plastid	11.29	33.14
PGSC0003DMT400035218	Potato	plastid	12.59	30.58
PGSC0003DMT400031568	Potato	plastid	16.58	27.35
PGSC0003DMT400047731	Potato	plastid	17.18	26.83
PGSC0003DMT400003356	Potato	cytosol	18.58	24.25

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0019252	GO:GO:0030246	GO:GO:0033201	GO:GO:2001070	InterPro:GS/SS	InterPro:Glyco_trans_1
UniProt:M1AF51	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	EnsemblPlantsGene:PGSC0003DMG400008322	PGSC:PGSC0003DMG400008322
EnsemblPlants:PGSC0003DMT400021444	PANTHER:PTHR12526	PANTHER:PTHR12526:SF341	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI000295ED94	SEG:seg	:	:	:	:

Description

Starch synthase IV [Source:PGSC_GENE;Acc:PGSC0003DMG400008322]

Coordinates

chr2:-:30142740..30152314

Molecular Weight (calculated)

113757.0 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.487

Length

1001 amino acids

Sequence
(BLAST)

0001: MEMKISNCFP TQKWCGGAPF SRQVNVRFYP LPSQRLLPAS SKMRQRRNFS LQNKKKQTKT INIERPPDVD LQSSDDVDSD TEKMSKRSLS SSNQEVSIEE
0101: NVDTLTETKS SDEITYSSVD SNEEGRPSSV HLKDLIGMIR NAEKNIHLLN EARVHALEEL QKVLGEKEDL HGKINILEMK LAETDARLRV ASQEKIHVEL
0201: LEDQLEKIKN ELSSSRGSEE NVLHVNNSVP LSHSDSVNSL SEEFDSLRKE NILLKQDLQA MKSGLSLVKE TDERILMLEK ERSVLESSLS ELESKLAASQ
0301: EDVSELSSLK LECKKLYEKV EHLQALLAKA TKQADQALSV LQQNQELRKK VDRLEESLEE ASIYKLSSEK LQQYNEQMQQ KIKLLDERLQ RSDEEIQSYV
0401: QLHQDSVKEF QDTLDNLKNE TKKKALDEPV NEMPSEFWSW LLLMIEGWSM EKKISKDDAK LLRELVWKRD GSICDAYMSC KEKNDREILA AFLRFTSSPT
0501: RPGLHIIHIA AEMAPVAKVG GLGDVVAGLG KALQEKGHLV EIVLPKYDCM QYESIKDMKV LDVVVESYFD GRLYKNNIWT GIVEGLPVYF IEPQHPGKFF
0601: CRGQLYGEHD DFKRFSFFSR VALELLLQAE KRPDIIHCHD WQTAFVAPLY WEIYVPKGLD SARICFTCHN FEYQGTAAAS ELTSCGLDAY HLNKPDRMQD
0701: NSANDRINPV KGAIVFSNIV TTVSPTYAQE VRSAQGGKGL HATINSHSKK FAGILNGIDT DAWNPASDNF LKVQYSASDI DGKIQNKEAL RRLLGLSSSD
0801: FRQPLVSCIT RLVPQKGVHL IRHAIYRTLE LGGQFVLLGS SPVPHIQREF EDIGNHFQNH EHARLVLKYD EALSHLIYAA SDMLIIPSIF EPCGLTQMIA
0901: MRYGSIPIAR KTGGLNDSVF DVDDDSIPLQ FRNGFTFVTA DEQGFNNALE RAFNYYMNNA ETWKELVQKD MSIDFSWDSS ASQYEELYEK AVLRARAASR
1001: S

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.