Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021017.1-P | Field mustard | plastid | 98.92 | 98.92 |
| CDY08902 | Canola | plastid | 97.16 | 97.16 |
| AT4G18240.1 | Thale cress | plastid | 88.33 | 86.63 |
| GSMUA_Achr3P16350_001 | Banana | endoplasmic reticulum, vacuole | 15.98 | 73.76 |
| VIT_10s0003g02880.t01 | Wine grape | plastid | 66.57 | 67.16 |
| KRH58438 | Soybean | nucleus | 64.02 | 66.03 |
| KRH42312 | Soybean | nucleus | 63.92 | 65.86 |
| TraesCS1A01G353300.1 | Wheat | cytosol | 43.33 | 64.43 |
| Solyc02g071040.2.1 | Tomato | nucleus | 61.86 | 63.04 |
| PGSC0003DMT400021444 | Potato | plastid | 61.86 | 63.04 |
| GSMUA_Achr8P27560_001 | Banana | plastid | 55.49 | 60.21 |
| OQU78343 | Sorghum | plastid | 50.0 | 56.11 |
| GSMUA_Achr3P16340_001 | Banana | plastid | 40.2 | 55.93 |
| TraesCS1B01G368500.1 | Wheat | plastid | 50.0 | 55.86 |
| TraesCS1D01G356900.1 | Wheat | plastid | 49.8 | 55.64 |
| Os05t0533600-02 | Rice | plastid | 49.9 | 55.39 |
| Zm00001d010821_P002 | Maize | plastid | 49.22 | 55.23 |
| HORVU1Hr1G080950.5 | Barley | plastid | 50.1 | 53.45 |
| Os01t0720600-01 | Rice | plastid | 49.22 | 51.49 |
| CDY45619 | Canola | plastid | 19.02 | 29.44 |
| CDY08760 | Canola | plastid | 19.02 | 28.28 |
| CDY34695 | Canola | plastid | 3.92 | 27.97 |
| CDY21007 | Canola | plastid | 28.04 | 26.91 |
| CDY43274 | Canola | plastid | 18.24 | 26.65 |
| CDX80428 | Canola | plastid | 16.86 | 26.42 |
| CDX88091 | Canola | plastid | 16.86 | 26.42 |
| CDY31209 | Canola | plastid | 27.55 | 26.21 |
| CDX97980 | Canola | plastid | 27.65 | 25.85 |
| CDY49799 | Canola | mitochondrion | 27.35 | 25.71 |
| CDY37538 | Canola | plastid | 17.06 | 25.7 |
| CDY71840 | Canola | plastid | 7.06 | 23.84 |
| CDX73274 | Canola | plastid | 7.55 | 20.16 |
| CDY55806 | Canola | plastid | 10.69 | 19.71 |
| CDY34693 | Canola | endoplasmic reticulum, golgi | 7.55 | 19.35 |
| CDY21006 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| KEGG:00500+2.4.1.21 | MapMan:3.2.2.4.4 | Gene3D:3.40.50.2000 | GO:A0A078CKJ5 | EnsemblPlants:CDX76534 | ProteinID:CDX76534 |
| ProteinID:CDX76534.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 | GO:GO:0016740 |
| InterPro:GS/SS | EnsemblPlantsGene:GSBRNA2T00126961001 | InterPro:Glyco_trans_1 | HAMAP:MF_00484 | PFAM:PF00534 | PFAM:PF08323 |
| PFscan:PS51257 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF341 | MetaCyc:PWY-622 | SUPFAM:SSF53756 | InterPro:Starch_synth_cat_dom |
| TIGRFAMs:TIGR02095 | UniPathway:UPA00164 | UniParc:UPI0004EF4387 | SEG:seg | : | : |
Description
BnaA08g08660D
Coordinates
chrLK031807:-:1914164..1919030
Molecular Weight (calculated)
115677.0 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.540
Length
1020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTTTKLSSCF LTNGLVGISC KREHGGSPRF FYLPSRRLLP ASCKIRQQRG FDSNKRQDIK KGSPEPILPI SSSLQSNSDE EDSQPDNGSA DTIHSTVETN
0101: HVDSSTENTD EDVQKSEVTR LKSKLTKKKE SDGQDLNVLT VPEVAKALSI NKSGGEQFSD GQFGELMTMI RNAEQNILRL DQARVSALAE LSKILSEKEA
0201: LQGEINVLEM KLAETDERIK TAAQEKVRVE LLEEQLEKLR QEMVSPPPES DGYVLALSRE IETLKIENLS LRNDIETLKS KLESVENTDE RVVVLEKECS
0301: GLESSVKDLE SKLLVSQEDV SKLSSLKTEC SDLWTKVESL QMLLDRATKQ AEQAVLVLQQ NQDLKSKVEK IEESLKEANV YKESSEKIQQ YNELMQHKVE
0401: LLEERLEKSD AEIFSYVQLY QESIKEFQET LMRLKEESNR KEPRDEPVDD MPWDYWSRLL LTVDGWLLEK KIANDDADSL REMVWKKDRR IHDTYIDVKD
0501: KSERDAISAF LKLVSSPTSQ GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRRGHLVEI ILPKYDCMQY DRVRDLRALD TVVESYFDGK LYKNKIWIGT
0601: VEGLPVHFIE PQHPSKFFWR GQFYGEKDDF KRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTSSASDL
0701: GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TSEGGKGLHS TLNSNSKKFI GILNGIDTDS WNPATDPFLK AQFNAKDLQG
0801: KEENKYALRK QLGLSSAEPR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH VRLLLKYDEA LSHSIYAASD
0901: MFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGLNYALERA FNHYKKDEEK WMRLMEKVMS IDFSWASSAT
1001: QYEELYTRSV ARARASPNRT
0101: HVDSSTENTD EDVQKSEVTR LKSKLTKKKE SDGQDLNVLT VPEVAKALSI NKSGGEQFSD GQFGELMTMI RNAEQNILRL DQARVSALAE LSKILSEKEA
0201: LQGEINVLEM KLAETDERIK TAAQEKVRVE LLEEQLEKLR QEMVSPPPES DGYVLALSRE IETLKIENLS LRNDIETLKS KLESVENTDE RVVVLEKECS
0301: GLESSVKDLE SKLLVSQEDV SKLSSLKTEC SDLWTKVESL QMLLDRATKQ AEQAVLVLQQ NQDLKSKVEK IEESLKEANV YKESSEKIQQ YNELMQHKVE
0401: LLEERLEKSD AEIFSYVQLY QESIKEFQET LMRLKEESNR KEPRDEPVDD MPWDYWSRLL LTVDGWLLEK KIANDDADSL REMVWKKDRR IHDTYIDVKD
0501: KSERDAISAF LKLVSSPTSQ GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRRGHLVEI ILPKYDCMQY DRVRDLRALD TVVESYFDGK LYKNKIWIGT
0601: VEGLPVHFIE PQHPSKFFWR GQFYGEKDDF KRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTSSASDL
0701: GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TSEGGKGLHS TLNSNSKKFI GILNGIDTDS WNPATDPFLK AQFNAKDLQG
0801: KEENKYALRK QLGLSSAEPR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH VRLLLKYDEA LSHSIYAASD
0901: MFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGLNYALERA FNHYKKDEEK WMRLMEKVMS IDFSWASSAT
1001: QYEELYTRSV ARARASPNRT
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Arabidopsis Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.