CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73274	Canola	plastid	98.68	78.01
GSMUA_Achr1P16610_001	Banana	plastid	55.63	55.08
AT1G32900.1	Thale cress	plastid	86.42	42.79
Bra010189.1-P	Field mustard	nucleus	99.67	41.12
VIT_02s0025g02790.t01	Wine grape	plastid	71.19	35.54
KRG92546	Soybean	plastid	67.55	33.72
KRH34245	Soybean	plastid	67.55	33.55
GSMUA_Achr1P06140_001	Banana	plastid	66.56	32.63
GSMUA_Achr9P20780_001	Banana	plastid	65.56	32.25
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	65.56	32.14
HORVU7Hr1G012380.5	Barley	plastid	59.6	29.85
HORVU2Hr1G090980.3	Barley	plastid	58.28	29.68
Os07t0412100-01	Rice	plastid	59.6	29.61
TraesCS4A01G418200.1	Wheat	plastid	59.27	29.59
Zm00001d045462_P001	Maize	plastid	59.6	29.56
Zm00001d033937_P002	Maize	plastid	59.6	29.56
EER98410	Sorghum	plastid	59.27	29.49
TraesCS2A01G373600.1	Wheat	plastid	58.28	29.38
TraesCS7D01G064300.1	Wheat	plastid	58.61	29.3
TraesCS2D01G369800.1	Wheat	plastid	57.95	29.22
TraesCS2B01G390700.1	Wheat	plastid	57.95	29.22
EER87785	Sorghum	plastid	58.61	29.11
TraesCS7A01G070100.1	Wheat	plastid	57.95	28.97
Zm00001d019479_P004	Maize	plastid	59.6	28.75
Os06t0133000-02	Rice	plastid	57.95	28.74
CDY55806	Canola	plastid	34.44	18.81
CDY37538	Canola	plastid	35.76	15.95
CDY34693	Canola	endoplasmic reticulum, golgi	20.86	15.83
CDY43274	Canola	plastid	35.76	15.47
Zm00001d033690_P001	Maize	cytosol, plastid	17.22	15.29
CDX80428	Canola	plastid	32.45	15.05
CDX88091	Canola	plastid	32.12	14.9
Zm00001d027242_P002	Maize	plastid	27.81	14.33
CDY34695	Canola	plastid	5.63	11.89
CDY45619	Canola	plastid	15.56	7.13
CDY08902	Canola	plastid	23.84	7.06
CDX76534	Canola	plastid	23.84	7.06
CDY08760	Canola	plastid	15.56	6.85
CDY21007	Canola	plastid	17.22	4.89
CDY31209	Canola	plastid	17.22	4.85
CDY49799	Canola	mitochondrion	17.22	4.79
CDX97980	Canola	plastid	17.22	4.77
Zm00001d029360_P001	Maize	cytosol	0.99	1.2
GSMUA_Achr1P16620_001	Banana	cytosol	0.0	0.0
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71840	EnsemblPlantsGene:GSBRNA2T00020677001	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	MetaCyc:PWY-622
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	PFAM:PF08323	ProteinID:CDY71840	ProteinID:CDY71840.1	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0004EE74B2	UniPathway:UPA00164	UniProt:A0A078JZQ5	MapMan:50.2.4	:

Description

BnaAnng38950DBnaAnng38950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZQ5]

Coordinates

chrLK047755:-:92..2002

Molecular Weight (calculated)

33412.3 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.097

Length

302 amino acids

Sequence
(BLAST)

001: MAYVTASHFV SLVNNNHGGA SGSEANANLS QISFKCQSMT HCGLRSFNMV DRLQRRCQAK AVSAKSSKGL QQNAPKAKRV GKIVCEKGMS MIFIGAEVGP
101: WSKTGGLGDV LGGLPPALAA RGHRVMTVCP RYDQYKDAWD TCVVVQIKVG DKVEDVRFFH CYKRGVDRVF VDHPLFLAKV VGKTGSKIYG PITGVDYTDN
201: QLRFSLLCQA ALEAPRVLNL NSSKYFSGPY GEDVVFVAND WHTALLPCYL KSMYQSRGIY MNAKVVFCIH NIAYQGRFAF DDFSLLNLPD SFKSSFDFMD
301: GY

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.