CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045462_P001	Maize	plastid	93.75	93.6
Zm00001d033937_P002	Maize	plastid	93.75	93.6
HORVU7Hr1G012380.5	Barley	plastid	82.73	83.42
Os06t0133000-02	Rice	plastid	83.39	83.25
TraesCS7D01G064300.1	Wheat	plastid	81.41	81.95
TraesCS4A01G418200.1	Wheat	plastid	81.41	81.82
TraesCS7A01G070100.1	Wheat	plastid	81.25	81.79
VIT_02s0025g02790.t01	Wine grape	plastid	66.12	66.45
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.11	66.23
GSMUA_Achr1P06140_001	Banana	plastid	66.94	66.07
Solyc08g083320.2.1	Tomato	plastid	63.49	64.12
GSMUA_Achr9P20780_001	Banana	plastid	64.64	64.01
PGSC0003DMT400031568	Potato	plastid	63.82	63.92
VIT_15s0048g02600.t01	Wine grape	plastid	63.98	63.35
KRH34245	Soybean	plastid	62.66	62.66
KRG92546	Soybean	plastid	62.34	62.64
KRH47803	Soybean	nucleus	63.49	62.36
KRH06370	Soybean	nucleus, plastid	63.49	62.36
AT1G32900.1	Thale cress	plastid	62.34	62.13
EER98410	Sorghum	plastid	61.35	61.45
CDY71840	Canola	plastid	29.11	58.61
GSMUA_Achr1P16610_001	Banana	plastid	28.95	57.7
GSMUA_Achr1P16620_001	Banana	cytosol	19.24	52.23
Bra010189.1-P	Field mustard	nucleus	62.83	52.19
CDX73274	Canola	plastid	31.74	50.52
KXG19354	Sorghum	plastid	33.06	31.07
OQU91730	Sorghum	cytosol	33.55	29.82
EES05532	Sorghum	plastid	34.21	29.55
KXG19644	Sorghum	plastid	34.87	27.53
OQU78343	Sorghum	plastid	25.66	17.16
KXG31317	Sorghum	plastid	14.31	12.46
KXG27148	Sorghum	mitochondrion, plastid	24.01	12.26
KXG24650	Sorghum	plastid	23.36	8.43

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EntrezGene:8068390	ProteinID:AAD02978.1	ProteinID:AAQ06262.1
ProteinID:ABK80478.1	ProteinID:ABK80488.1	ProteinID:ABK80490.1	EnsemblPlants:EER87785	ProteinID:EER87785	ProteinID:EER87785.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	GO:GO:0019863	GO:GO:0033840	GO:GO:0043531
GO:GO:0102502	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	MetaCyc:PWY-622	UniProt:Q5NKS5	EnsemblPlantsGene:SORBI_3010G022600	SUPFAM:SSF53756
unigene:Sbi.114	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	EMBL:U23945	UniParc:UPI0000137B05	RefSeq:XP_002436418.1
SEG:seg	:	:	:	:	:

Description

WAXYhypothetical protein

Coordinates

chr10:+:1860965..1865278

Molecular Weight (calculated)

66077.7 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.106

Length

608 amino acids

Sequence
(BLAST)

001: MSTLATSQLV ATHAGLGVPD ASMFRRGGVQ GLRAAARASA AAGDALSMRT SACPAPRQQP AARRGGRGGR FPSLVVCATA GMNVVFVGAE MAPWSKTGGL
101: GDVLGGLPPA MAANGHRVMV VSPRYDQYKD AWDTSVVSEI KMGDGYETVR FFHCYKRGVD RVFIDHPLFL ERVWGKTEEK IYGPDAGTDY KDNQLRFSLL
201: CQAALEAPRI LSLNNNPYFS GPYGEDVVFV CNDWHTGPLS CYLKSNYQSN GIYKDAKTAF CIHNISYQGR FAFSDFPELN LPERFKSSFD FIDGYEKPVE
301: GRKINWMKAG ILEADRVLTV SPYYAEELIS GIARGCELDN IMRLTGITGI VNGMDVSEWD PSKDKYIAVK YDVSTAVEAK ALNKEALQAE VGLPVDRKIP
401: LVAFIGRLEE QKGPDVMAAA IPLLMEEDIQ IVLLGTGKKK FERMLMSAEE KYPDKVRAVV KFNAALAHHI MAGADLLAVT SRFEPCGLIQ LQGMRYGTPC
501: ACASTGGLVD TIIEGKTGFH MGRLSVDCNV VEPADVKKVA TTLKRAIKVV GTPAYEEMVK NCMIQDLSWK GPAKNWENVL LSLGVAGGEP GIEGEEIAPL
601: AKENVAAP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.