Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P06140_001 | Banana | plastid | 74.11 | 26.95 |
| GSMUA_Achr1P08190_001 | Banana | cytosol, plastid | 71.88 | 26.14 |
| GSMUA_Achr9P20780_001 | Banana | plastid | 67.86 | 24.76 |
| GSMUA_Achr8P24090_001 | Banana | cytosol | 31.7 | 23.59 |
| VIT_02s0025g02790.t01 | Wine grape | plastid | 57.59 | 21.32 |
| Solyc08g083320.2.1 | Tomato | plastid | 56.7 | 21.1 |
| KRH06370 | Soybean | nucleus, plastid | 57.59 | 20.84 |
| PGSC0003DMT400031568 | Potato | plastid | 56.25 | 20.76 |
| KRH47803 | Soybean | nucleus | 57.14 | 20.68 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plastid | 21.43 | 20.6 |
| VIT_15s0048g02600.t01 | Wine grape | plastid | 56.25 | 20.52 |
| KRH34245 | Soybean | plastid | 54.91 | 20.23 |
| Os06t0133000-02 | Rice | plastid | 54.91 | 20.2 |
| KRG92546 | Soybean | plastid | 54.46 | 20.17 |
| AT1G32900.1 | Thale cress | plastid | 54.02 | 19.84 |
| Zm00001d033937_P002 | Maize | plastid | 52.68 | 19.38 |
| Zm00001d045462_P001 | Maize | plastid | 52.68 | 19.38 |
| EER87785 | Sorghum | plastid | 52.23 | 19.24 |
| TraesCS4A01G418200.1 | Wheat | plastid | 51.79 | 19.17 |
| HORVU7Hr1G012380.5 | Barley | plastid | 51.34 | 19.07 |
| TraesCS7D01G064300.1 | Wheat | plastid | 51.34 | 19.04 |
| TraesCS7A01G070100.1 | Wheat | plastid | 51.34 | 19.04 |
| GSMUA_Achr3P16350_001 | Banana | endoplasmic reticulum, vacuole | 18.3 | 18.55 |
| Bra010189.1-P | Field mustard | nucleus | 53.12 | 16.26 |
| GSMUA_Achr6P23190_001 | Banana | cytosol | 31.7 | 9.75 |
| GSMUA_Achr4P10220_001 | Banana | plastid | 33.48 | 9.64 |
| GSMUA_Achr3P03290_001 | Banana | plastid | 28.12 | 9.12 |
| GSMUA_Achr1P24650_001 | Banana | mitochondrion | 30.36 | 8.63 |
| GSMUA_Achr8P27560_001 | Banana | plastid | 27.23 | 6.49 |
| GSMUA_Achr5P00700_001 | Banana | plastid | 23.66 | 4.73 |
| GSMUA_Achr3P16340_001 | Banana | plastid | 8.93 | 2.73 |
| GSMUA_Achr11P... | Banana | plastid | 0.0 | 0.0 |
| GSMUA_Achr1P16610_001 | Banana | plastid | 0.0 | 0.0 |
| GSMUA_Achr1P24640_001 | Banana | cytosol | 0.0 | 0.0 |
| CDY71840 | Canola | plastid | 0.0 | 0.0 |
| CDX73274 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P16620_001 | EnsemblPlants:GSMUA_Achr1T16620_001 | EnsemblPlantsGene:GSMUA_Achr1G16620_001 | Gene3D:3.40.50.2000 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF452 |
| SEG:seg | SUPFAM:SSF53756 | UniParc:UPI00029594B5 | UniProt:M0S0H0 | MapMan:35.1 | : |
Description
Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G16620_001]
Coordinates
chr1:+:12391457..12392608
Molecular Weight (calculated)
25123.2 Da
IEP (calculated)
5.335
GRAVY (calculated)
-0.282
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTNEWNPST DRYISANYDA TTVMDAKPFN KEALQVEVKL LVDRNIPVIA FIGRLEEQKG SDILAAAIPE FIDENVPSYS SLHLQGTGKK KLEQQLALLE
101: NMFPDKVRAH LKFNVPLAHG IMAACHSFCG SSRMEFQNLD HCENFLQPPM CATTGGLVDT VKEGITGLHM RPFNVDCDVV DEDDIQKVVK MTKRVLEVYQ
201: TAAFAKMIQN CMDQDLSWKG PAKK
101: NMFPDKVRAH LKFNVPLAHG IMAACHSFCG SSRMEFQNLD HCENFLQPPM CATTGGLVDT VKEGITGLHM RPFNVDCDVV DEDDIQKVVK MTKRVLEVYQ
201: TAAFAKMIQN CMDQDLSWKG PAKK
001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
Arabidopsis Description
GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.