Factsheet for GSMUA_Achr3P16350_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	36.65	34.76
TraesCS1A01G353300.1	Wheat	cytosol	68.78	22.16
GSMUA_Achr8P24090_001	Banana	cytosol	29.86	21.93
GSMUA_Achr8P27560_001	Banana	plastid	86.43	20.32
GSMUA_Achr1P16620_001	Banana	cytosol	18.55	18.3
Os05t0533600-02	Rice	plastid	74.21	17.85
OQU78343	Sorghum	plastid	71.04	17.27
TraesCS1B01G368500.1	Wheat	plastid	70.59	17.09
TraesCS1D01G356900.1	Wheat	plastid	70.14	16.98
Zm00001d010821_P002	Maize	plastid	68.33	16.61
HORVU1Hr1G080950.5	Barley	plastid	71.49	16.53
VIT_10s0003g02880.t01	Wine grape	plastid	74.21	16.22
KRH58438	Soybean	nucleus	72.4	16.18
KRH42312	Soybean	nucleus	71.95	16.06
PGSC0003DMT400021444	Potato	plastid	72.4	15.98
Solyc02g071040.2.1	Tomato	nucleus	72.4	15.98
Bra021017.1-P	Field mustard	plastid	73.76	15.98
CDX76534	Canola	plastid	73.76	15.98
CDY08902	Canola	plastid	72.85	15.78
Os01t0720600-01	Rice	plastid	68.78	15.59
AT4G18240.1	Thale cress	plastid	73.3	15.58
GSMUA_Achr3P03290_001	Banana	plastid	30.32	9.7
GSMUA_Achr1P06140_001	Banana	plastid	26.7	9.58
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	26.24	9.42
GSMUA_Achr9P20780_001	Banana	plastid	24.43	8.79
GSMUA_Achr6P23190_001	Banana	cytosol	28.51	8.65
GSMUA_Achr4P10220_001	Banana	plastid	29.86	8.48
GSMUA_Achr1P24650_001	Banana	mitochondrion	28.51	7.99
GSMUA_Achr5P00700_001	Banana	plastid	38.46	7.59
GSMUA_Achr3P16340_001	Banana	plastid	7.24	2.18
GSMUA_Achr1P24640_001	Banana	cytosol	0.9	1.01
GSMUA_Achr11P...	Banana	plastid	1.36	0.29
GSMUA_Achr1P16610_001	Banana	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P16350_001	EnsemblPlants:GSMUA_Achr3T16350_001	EnsemblPlantsGene:GSMUA_Achr3G16350_001	Gene3D:3.40.50.2000	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR12526	PANTHER:PTHR12526:SF341	PFAM:PF13692	SEG:seg	SUPFAM:SSF53756
TMHMM:TMhelix	UniParc:UPI0002961B69	UniProt:M0SF51	MapMan:35.1	:	:

Description

Putative Glycogen synthase [Source:GMGC_GENE;Acc:GSMUA_Achr3G16350_001]

Coordinates

chr3:+:17573687..17575957

Molecular Weight (calculated)

25299.4 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.086

Length

221 amino acids

Sequence
(BLAST)

001: MRDVALSAEN SSLFFWLFLC SYLRMVGCIT RLVPQKGVHL IRHAIYRTLE LGGQFVLLGS SPVAHIQQEF EGIANHFQSH SHVRLLLKYD DALSHLIYAA
101: SDMFIIPSMF EPCGLTQMIA MRYGSVPIVR KTGGLNDSVF DIDDNTVPVQ YRNGFTFITP NEQGLSNAME RAFQYCIRSP ESWQQLVQRD MRLDFSWNSS
201: ATQYEELYER SVARARATTR V

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.