CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42312	Soybean	nucleus	94.24	94.14
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	16.18	72.4
VIT_10s0003g02880.t01	Wine grape	plastid	71.28	69.73
Solyc02g071040.2.1	Tomato	nucleus	66.73	65.93
TraesCS1A01G353300.1	Wheat	cytosol	45.7	65.89
PGSC0003DMT400021444	Potato	plastid	66.63	65.83
Bra021017.1-P	Field mustard	plastid	66.13	64.12
CDX76534	Canola	plastid	66.03	64.02
AT4G18240.1	Thale cress	plastid	66.84	63.56
CDY08902	Canola	plastid	65.42	63.43
GSMUA_Achr8P27560_001	Banana	plastid	59.05	62.13
GSMUA_Achr3P16340_001	Banana	plastid	43.38	58.53
TraesCS1B01G368500.1	Wheat	plastid	53.59	58.05
TraesCS1D01G356900.1	Wheat	plastid	53.39	57.83
Os05t0533600-02	Rice	plastid	53.08	57.13
OQU78343	Sorghum	plastid	51.77	56.33
HORVU1Hr1G080950.5	Barley	plastid	53.39	55.23
Zm00001d010821_P002	Maize	plastid	50.76	55.23
Os01t0720600-01	Rice	plastid	52.88	53.64
KRH01182	Soybean	cytosol	8.59	31.95
KRH74428	Soybean	plastid	21.13	30.56
KRH34245	Soybean	plastid	16.99	27.63
KRG92546	Soybean	plastid	16.68	27.27
KRH06370	Soybean	nucleus, plastid	16.99	27.14
KRH39530	Soybean	cytosol	7.48	26.91
KRH47803	Soybean	nucleus	16.78	26.82
KRH53506	Soybean	plastid	16.99	26.5
KRH64431	Soybean	plastid	16.99	25.81
KRH51091	Soybean	plastid	27.5	25.14
KRH20852	Soybean	plastid	28.61	24.63
KRH11434	Soybean	plastid	28.72	24.36
KRH18473	Soybean	plastid	18.6	23.71
KRH16258	Soybean	extracellular	3.24	23.53
KRG93537	Soybean	plastid	18.2	23.26
KRH15937	Soybean	plastid	2.33	17.69

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100788308	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	EMBL:ACUP02003262	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G127800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:I1K307	EnsemblPlants:KRH58438
ProteinID:KRH58438	ProteinID:KRH58438.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF341	MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000233A867
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:32125404..32138244

Molecular Weight (calculated)

111948.0 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.429

Length

989 amino acids

Sequence
(BLAST)

001: MASKLRTCFV CWNLSGFNCV NHHNANNNWV VRVSFPASCK MRHRATFSSQ HKRQQIKPSA EGGLRQNQDE EDDTEVSLNN DDSVENLNDA TAPLAINING
101: AEQAEQLSGR QLEDLLVMIK NAEKNILLLN EARIRACEDL EKILVEKEAL QGEINVLETR LAETDARITV ANQEKIHVEF LEGQLEKLRN ELAQKGSTER
201: KYAELHDLQN DDLSDANPLS HNVSIHSLTE ELNSLRAENA SLKNAIESFK TQLSDVKNND ERLVALEKER SSLESALKDL ESKLSISQDG VSQISTLTVE
301: CKDLWDKVEN LQSLLDKATK QADQAVLVLQ QNQDLRRKVD KLEASLEEAN IYKLSSDKLQ KYNELMQQKI KLLEDRLQKS DEEINSYVWL YQQSVKEFQD
401: TLDTLKKESK KRNLEEPVED MPWEFWSQLL LLIDGWTLEN KISVDDASLL REKVWKRDRR ISDTYIACKK QTEQEAISAF LGLLSSATSP GLHVIHIAAE
501: MAPVAKVGGL GDVVSGLGKA LQKKGHLVEI VLPKYDCMQY DRVCDLRALD VLIDSYFDRQ LYKNKIWVGT IEGLPVYFIE PHHPDKFFWR GKFYGEHDDF
601: RRFSFFSRAA LEFLLQAGKK PDIIHCHDWQ TAFIAPLYWD IYAPKGLNSA RICFTCHNFE YQGTAAASEL ESCGLESHHL NRPDRMQDNS AHDRVNSVKG
701: GIVFSNIVTT VSPTYAQEVR TSEGGHGLHS TLSAHSKKFI GILNGIDTDA WNPATDAFLP VQYNATDLQG KAENKQALRR NLGLSSTDVR RPLVGCITRL
801: VPQKGVHLIR HAIYLTLELG GQFVLLGSSP VPHIQNEFEG IANHFQNHDH IRLILKYDES LSHVIYAASD MFIIPSIFEP CGLTQMISMR YGAIPIVRKT
901: GGLNDSVFDV DDDTIPSQFR NGFTFVNADE QGLNGALVRA FNLFNNNPES WKQLVQKDMN IDFSWETSSA QYEELYLKSV ARAKAAKLA

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.