CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93537	Soybean	plastid	93.81	94.06
KRH01182	Soybean	cytosol	29.51	86.09
VIT_14s0108g00940.t01	Wine grape	plastid	67.4	65.38
Solyc02g088000.2.1	Tomato	nucleus, plastid	62.5	63.15
PGSC0003DMT400003356	Potato	cytosol	61.86	62.58
TraesCS6D01G287000.1	Wheat	plastid	53.22	62.29
HORVU6Hr1G075950.4	Barley	plastid	53.35	61.33
TraesCS6B01G336400.1	Wheat	plastid	53.22	61.28
TraesCS6A01G307800.1	Wheat	plastid	53.09	60.95
Os02t0744700-01	Rice	nucleus	52.06	59.67
Zm00001d052263_P001	Maize	plastid	53.61	59.43
EES05532	Sorghum	plastid	53.87	59.38
OQU91730	Sorghum	cytosol	52.32	59.36
Zm00001d018033_P001	Maize	plastid	52.32	59.01
TraesCS1B01G155700.3	Wheat	plastid	54.51	56.93
Os10t0437600-00	Rice	plastid	54.38	56.34
TraesCS1D01G138100.2	Wheat	plastid	54.38	56.19
TraesCS1A01G137200.1	Wheat	plastid	54.38	56.19
Zm00001d014150_P005	Maize	plastid	55.15	55.3
KRH15937	Soybean	plastid	9.02	53.85
Zm00001d037234_P005	Maize	plastid	52.19	53.64
KXG19644	Sorghum	plastid	53.09	53.51
TraesCS7B01G093800.2	Wheat	plastid	53.99	52.51
HORVU1Hr1G035960.19	Barley	cytosol, plastid	54.25	52.43
TraesCS7A01G189000.1	Wheat	plastid	53.61	52.26
TraesCS7D01G190100.1	Wheat	plastid	53.61	52.07
Os06t0229800-01	Rice	plastid	53.87	51.6
GSMUA_Achr1P24640_001	Banana	cytosol	12.5	48.99
HORVU7Hr1G038420.1	Barley	plastid	53.74	48.72
KRH53506	Soybean	plastid	35.05	42.9
KRH64431	Soybean	plastid	35.44	42.24
KRH16258	Soybean	extracellular	6.7	38.24
KRH47803	Soybean	nucleus	29.38	36.83
KRH06370	Soybean	nucleus, plastid	29.25	36.67
KRG92546	Soybean	plastid	28.48	36.53
KRH34245	Soybean	plastid	28.48	36.35
KRH39530	Soybean	cytosol	8.12	22.91
KRH58438	Soybean	nucleus	23.71	18.6
KRH74428	Soybean	plastid	16.24	18.42
KRH42312	Soybean	nucleus	23.07	18.08
KRH51091	Soybean	plastid	22.94	16.45
KRH20852	Soybean	plastid	23.45	15.84
KRH11434	Soybean	plastid	23.07	15.35

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	EMBL:ACUP02008076	EnsemblPlantsGene:GLYMA_13G062700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:K7LXH7	EnsemblPlants:KRH18473	ProteinID:KRH18473	ProteinID:KRH18473.1
HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	MetaCyc:PWY-622
SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000296BE8B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:16045152..16059846

Molecular Weight (calculated)

86602.6 Da

IEP (calculated)

5.723

GRAVY (calculated)

-0.395

Length

776 amino acids

Sequence
(BLAST)

001: MASMGSLPFL VEANADSTLM MMMLQNRNHK FSSPKFNTVN ASSLVRGWGR GRVNHRCSSR GLLCLVEKNK HISALGKSSG TSEDKDESEE VLQATIEKSK
101: KVLALQRELL QQISERRKLV SSINSESTPE IEGDSISYEH SDESLSSDSI PQKGSAKRGS AVENENGVLV SSNYVQSIEK EIPDVSFVGI DLGLDKGEEE
201: DDNLSPVEKA SPRLYFDEQL NSKRYETITP DTLTSEIPRS TETSNRKIEI LEALSESSTK EVANEGDNVE SKGENPPPLA GANVMNVILV AAECAPFVKT
301: GGLGDVAGSL PKALARRGHR VMVVVPRYSH YADAQDIGVW KRYKVDGQDM EVTYFHSYID GVDFVFIDSP NFRHLQDNIY GGNREDILKR MVLFCKAAAE
401: VPWHVPCGGV CYGDGNLAFI ANDWHTALLP VYLKAYYRDH GLMKYTRSVL VIHNIAHQGR GPIDDFRYTD LPEHYIDLFK LYDPVGGEHF NIFSAGLKAA
501: DRIVTVSHGY AWEIKTSEGG WGLHGIINEN DWKLRGIVNG IDTKDWNPKI DVHLKSDGYT NYTLETLQSG KRQCKAALQK ELGLPVREDV PLLGFIGRLD
601: QQKGIDLIAE AIPWIVGQDV QLVMLGTGRP DLEDMLRQFE SQHRDKVRGW VGFSVKMAHR ITAGADILLM PSRFEPCGLN QLYAMNYGTI PVVHAVGGLR
701: DTVKPFNPFE ESGLGWTFDS AETNKLINAL GNCLLTFRQY KQSWEGLQRR GMTQDLSWDN AAQQYEEVLV AAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.