Factsheet for Zm00001d052263_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05532	Sorghum	plastid	89.86	89.35
Zm00001d018033_P001	Maize	plastid	87.71	89.24
KRH01182	Soybean	cytosol	30.29	79.7
Os02t0744700-01	Rice	nucleus	75.71	78.29
TraesCS6D01G287000.1	Wheat	plastid	73.86	77.98
HORVU6Hr1G075950.4	Barley	plastid	74.43	77.19
TraesCS6A01G307800.1	Wheat	plastid	73.43	76.04
TraesCS6B01G336400.1	Wheat	plastid	72.71	75.52
CDY34695	Canola	plastid	14.29	69.93
Bra021486.1-P	Field mustard	endoplasmic reticulum	19.71	65.4
CDY43274	Canola	plastid	58.86	59.03
CDY37538	Canola	plastid	56.86	58.79
Zm00001d037234_P005	Maize	plastid	61.29	56.82
KRH18473	Soybean	plastid	59.43	53.61
KRG93537	Soybean	plastid	58.86	53.23
AT3G01180.1	Thale cress	plastid	59.71	52.78
VIT_14s0108g00940.t01	Wine grape	plastid	59.71	52.25
Solyc02g088000.2.1	Tomato	nucleus, plastid	57.29	52.21
PGSC0003DMT400003356	Potato	cytosol	57.14	52.15
Bra039138.1-P	Field mustard	plastid	57.29	52.01
Zm00001d014150_P005	Maize	plastid	56.0	50.65
KRH15937	Soybean	plastid	9.14	49.23
CDY55806	Canola	plastid	37.29	47.2
Zm00001d045261_P006	Maize	plastid	36.57	45.71
Bra021487.1-P	Field mustard	cytosol	22.14	41.78
CDY34693	Canola	endoplasmic reticulum, golgi	21.0	36.93
Zm00001d045462_P001	Maize	plastid	29.43	33.83
Zm00001d033937_P002	Maize	plastid	29.43	33.83
Zm00001d033690_P001	Maize	cytosol, plastid	15.57	32.06
Zm00001d019479_P004	Maize	plastid	28.43	31.79
Zm00001d029360_P001	Maize	cytosol	10.71	30.0
Zm00001d027242_P002	Maize	plastid	19.29	23.04
Zm00001d010821_P002	Maize	plastid	25.0	19.25
Zm00001d026337_P013	Maize	plastid	25.29	14.86
Zm00001d002256_P012	Maize	plastid	25.0	14.73
Zm00001d051976_P002	Maize	plastid	10.0	13.36
Zm00001d000002_P002	Maize	plastid	25.86	10.79

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A1D6QEM6	ProteinID:AQK56572.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF371	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0008453CC7	EnsemblPlantsGene:Zm00001d052263
EnsemblPlants:Zm00001d052263_P001	EnsemblPlants:Zm00001d052263_T001	SEG:seg	:	:	:

Description

Starch synthase 2 chloroplastic/amyloplastic

Coordinates

chr4:+:185228834..185234452

Molecular Weight (calculated)

75743.1 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.275

Length

700 amino acids

Sequence
(BLAST)

001: MPGAISSSSS AFLLPVASSS PRRRRGSVGA ALRSYGYSGA ELRLHWARRG PPQDGAASVR AAAAPAGGES EEAAKSSSSS QAGAVQGSTA KTQAVDSASP
101: PNPLTSAPKQ SQSAAMQNGT SGGSSASTAA PVSGPKADHP SAPVTKREID ASAVKPEPAG DDARPVESIG IAEPVDAKAD AAPATDAAAS APYDREDNEP
201: GPLAGPNVMN VVVVASECAP FCKTGGLGDV VGALPKALAR RGHRVMVVIP RYGEYAEARD LGVRRRYKVA GQDSEVTYFH SYIDGVDFVF VEAPPFRHRH
301: NNIYGGERLD ILKRMILFCK AAVEVPWYAP CGGTVYGDGN LVFIANDWHT ALLPVYLKAY YRDNGLMQYA RSVLVIHNIA HQGRGPVDDF VNFDLPEHYI
401: DHFKLYDNIG GDHSNVFAAG LKTADRVVTV SNGYMWELKT SEGGWGLHDI INQNDWKLQG IVNGIDMSEW NPAVDVHLHS DDYTNYTFET LDTGKRQCKA
501: ALQRQLGLQV RDDVPLIGFI GRLDHQKGVD IIADAIHWIA GQDVQLVMLG TGRADLEDML RRFESEHSDK VRAWVGFSVP LAHRITAGAD ILLMPSRFEP
601: CGLNQLYAMA YGTVPVVHAV GGLRDTVAPF DPFNDTGLGW TFDRAEANRM IDALSHCLTT YRNYKESWRG LQARGMAQDL SWDHAAVLYE DVLVKAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.