Factsheet for Zm00001d019479_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98410	Sorghum	plastid	90.89	93.74
HORVU2Hr1G090980.3	Barley	plastid	81.15	85.67
TraesCS2D01G369800.1	Wheat	plastid	81.79	85.48
Os07t0412100-01	Rice	plastid	82.91	85.36
TraesCS2B01G390700.1	Wheat	plastid	81.31	84.97
TraesCS2A01G373600.1	Wheat	plastid	80.99	84.64
Zm00001d029360_P001	Maize	cytosol	31.79	79.6
Zm00001d033690_P001	Maize	cytosol, plastid	39.62	72.94
KRH06370	Soybean	nucleus, plastid	66.29	67.04
Solyc08g083320.2.1	Tomato	plastid	64.38	66.94
VIT_15s0048g02600.t01	Wine grape	plastid	65.5	66.78
PGSC0003DMT400031568	Potato	plastid	64.7	66.72
KRH47803	Soybean	nucleus	65.97	66.72
KRG92546	Soybean	plastid	64.06	66.28
VIT_02s0025g02790.t01	Wine grape	plastid	63.42	65.62
KRH34245	Soybean	plastid	63.42	65.3
AT1G32900.1	Thale cress	plastid	62.46	64.1
Zm00001d033937_P002	Maize	plastid	59.58	61.25
Zm00001d045462_P001	Maize	plastid	59.58	61.25
CDY71840	Canola	plastid	28.75	59.6
Zm00001d027242_P002	Maize	plastid	54.15	57.85
Bra010189.1-P	Field mustard	nucleus	62.78	53.69
CDX73274	Canola	plastid	30.99	50.79
Zm00001d045261_P006	Maize	plastid	30.19	33.75
Zm00001d018033_P001	Maize	plastid	31.63	28.78
Zm00001d052263_P001	Maize	plastid	31.79	28.43
Zm00001d014150_P005	Maize	plastid	32.11	25.97
Zm00001d037234_P005	Maize	plastid	30.51	25.3
Zm00001d010821_P002	Maize	plastid	25.08	17.27
Zm00001d051976_P002	Maize	plastid	10.54	12.6
Zm00001d026337_P013	Maize	plastid	23.48	12.34
Zm00001d002256_P012	Maize	plastid	23.16	12.21
Zm00001d000002_P002	Maize	plastid	24.28	9.06

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100125638	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	UniProt:A0A1D6HXP2	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	ProteinID:ONM52988.1	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF383	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000842A0DC	EnsemblPlantsGene:Zm00001d019479
EnsemblPlants:Zm00001d019479_P004	EnsemblPlants:Zm00001d019479_T004	SEG:seg	:	:	:

Description

granule-bound starch synthase1b granule-bound starch synthase1b

Coordinates

chr7:-:36171251..36178389

Molecular Weight (calculated)

68805.9 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.075

Length

626 amino acids

Sequence
(BLAST)

001: MAATMGSISA NGSYQTNRPS ALKQAPHMQF QQCCNGGLRF LSKHSQSTRS KIQVAKRRAT DNGIHPKTTG HRAPIVCSAG MTIVFVATEV HPWCKTGGLG
101: DVVGGLPPAL AAMGHRVMTI APRYDQYKDA WDTSVLVEVN IGDTVETVRF FHCYKRGVDR VFVDHPMFLE KVWGKTGAKL YGPTTGTDYR DNQLRFCLLC
201: LAALEAPRVL NFNNSEYFSG PYGEDVVFVA NDWHTAILPC YLKSMYKPNG IYKNAKVAFC IHNIAYQGRF ARADFDLLNL PDSFLPSFDF IDGHVKPVLG
301: RKLNWMKAGI IESDLVLTVS PHYVKELTSG PDKGVELDGV LRTKPLEIGI VNGMDVYEWD PSTDKYISVK YDATTVTEAR ALNKESLQAE VGLPVDSSIP
401: VIVFVGRLEE QKGSDILIAA IPEFVGENVQ IIVLGTGKKK MEEELTQLEV KYPNNARGIA KFNVPLAHMM FAGADFIIVP SRFEPCGLIQ LQGMRYGVVR
501: LPSSALLQQF RFFVTIPICS STGGLVDTVE EGVTGFHMGS FNVECETVDP ADVTAVASTV TRALKQYDTP AFHEMVQNCM AKDLSWKGPA KKWEEVLLGL
601: GVEGSRAGID DAEEIAPLAK ENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.