Factsheet for HORVU2Hr1G090980.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G369800.1	Wheat	plastid	96.96	95.99
TraesCS2B01G390700.1	Wheat	plastid	96.96	95.99
TraesCS2A01G373600.1	Wheat	plastid	96.46	95.49
EER98410	Sorghum	plastid	87.18	85.17
Os07t0412100-01	Rice	plastid	86.0	83.88
Zm00001d019479_P004	Maize	plastid	85.67	81.15
Zm00001d029360_P001	Maize	cytosol	30.86	73.2
Zm00001d033690_P001	Maize	cytosol, plastid	38.62	67.35
VIT_15s0048g02600.t01	Wine grape	plastid	69.31	66.94
VIT_02s0025g02790.t01	Wine grape	plastid	66.95	65.62
Solyc08g083320.2.1	Tomato	plastid	66.61	65.61
PGSC0003DMT400031568	Potato	plastid	66.78	65.24
KRG92546	Soybean	plastid	66.44	65.12
KRH06370	Soybean	nucleus, plastid	67.96	65.11
KRH47803	Soybean	nucleus	67.96	65.11
KRH34245	Soybean	plastid	65.43	63.82
AT1G32900.1	Thale cress	plastid	64.76	62.95
HORVU7Hr1G012380.5	Barley	plastid	61.05	60.03
CDY71840	Canola	plastid	29.68	58.28
Bra010189.1-P	Field mustard	nucleus	64.92	52.6
Zm00001d027242_P002	Maize	plastid	51.77	52.39
CDX73274	Canola	plastid	32.04	49.74
HORVU7Hr1G025390.4	Barley	cytosol, plastid	32.21	33.22
HORVU6Hr1G075950.4	Barley	plastid	34.23	30.07
HORVU1Hr1G035960.19	Barley	cytosol, plastid	36.09	26.65
HORVU7Hr1G038420.1	Barley	plastid	33.73	23.36
HORVU1Hr1G080950.5	Barley	plastid	26.81	16.63
HORVU2Hr1G106410.9	Barley	cytosol	24.79	11.06
HORVU1Hr1G021590.5	Barley	mitochondrion	25.13	9.35
HORVU0Hr1G005540.2	Barley	cytosol	0.67	0.39
HORVU0Hr1G005550.1	Barley	cytosol	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EMBL:AK368223	UniProt:F2DWF5	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009569	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
InterPro:GS/SS	InterPro:Glyco_trans_1	EnsemblPlantsGene:HORVU2Hr1G090980	EnsemblPlants:HORVU2Hr1G090980.3	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI00020072C6	SEG:seg	:	:	:	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:F2DWF5]

Coordinates

chrchr2H:-:646656338..646661455

Molecular Weight (calculated)

65593.2 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.083

Length

593 amino acids

Sequence
(BLAST)

001: MGSYQTNSVG SLKLSPHIQF QQSCNNGVMF LSMRNKTQLA KRRATNYETH RNSSRTSSPI VCSTGMPIIF VATEVHPWCK TGGLGDVVGG LPPALAAMGH
101: RVMTIAPRYD QYKDTWDTNV LVEVIVGDRT ETVRFFHCYK RGVDRVFVDH PMFLEKVWGK TGSKLYGPTT GTDFRDNQLR FCLLCLAALE APRVLNLNNS
201: EYFSGPYGEN VVFVANDWHT AVLPCYLKSM YKQNGIYENA KVAFCIHNIA YQGRFPRADF ELLNLPESFM PSFDFVDGHV KPVVGRKINW MKAGITECDV
301: VLTVSPHYVK ELTSGPEKGV ELDGVLRTKP LETGIVNGMD VIDWNPATDK YISVKYNATT VAEARALNKE ILQAEVGLPV DSSIPVIVFI GRLEEQKGSD
401: ILIAAIPEFV EENVQIIVLG TGKKKMEEEL MLLEVKYPQN ARGIAKFNVP LAHMMFAGAD FIIIPSRFEP CGLIQLQGMR YGVVPICSST GGLVDTVREG
501: VTGFHMGSFN VEFETVDPAD VTAVGSNVTR ALKQYRTPVF HAMVQNCMAQ DLSWKGPAKK WEEALLSLGV EGSQPGIEGE EIAPLAKQNV ATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.