Factsheet for HORVU0Hr1G005540.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G005550.1	Barley	cytosol	14.91	77.04
HORVU2Hr1G106410.9	Barley	cytosol	46.79	35.67
CDY21007	Canola	plastid	24.78	23.61
HORVU1Hr1G021590.5	Barley	mitochondrion	30.4	19.33
Os02t0807100-01	Rice	plastid	1.88	6.13
HORVU1Hr1G080950.5	Barley	plastid	3.65	3.87
AT5G65685.5	Thale cress	extracellular, golgi	1.78	3.56
Zm00001d051976_P002	Maize	plastid	1.78	3.44
Bra024412.1-P	Field mustard	plastid	1.88	3.2
KXG31317	Sorghum	plastid	1.97	2.87
CDY08760	Canola	plastid	1.88	2.77
KRH74428	Soybean	plastid	1.68	2.49
CDY45619	Canola	plastid	1.58	2.43
HORVU1Hr1G035960.19	Barley	cytosol, plastid	1.88	2.37
HORVU7Hr1G038420.1	Barley	plastid	1.97	2.34
VIT_07s0205g00090.t01	Wine grape	plastid	0.49	2.28
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	1.09	2.26
HORVU6Hr1G075950.4	Barley	plastid	1.38	2.07
HORVU7Hr1G025390.4	Barley	cytosol, plastid	0.89	1.57
Solyc02g091760.1.1	Tomato	cytosol	0.2	1.07
HORVU7Hr1G012380.5	Barley	plastid	0.49	0.83
HORVU2Hr1G090980.3	Barley	plastid	0.39	0.67
PGSC0003DMT400078688	Potato	cytosol	0.2	0.51
Solyc02g091770.1.1	Tomato	mitochondrion	0.1	0.33
KRH39530	Soybean	cytosol	0.0	0.0
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU0Hr1G005540.2	EnsemblPlantsGene:HORVU0Hr1G005540	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	GO:GO:2001070
InterPro:CBM25	ncoils:Coil	PANTHER:PTHR12526	PANTHER:PTHR12526:SF345	PFAM:PF16760	SEG:seg
SMART:SM01066	UniParc:UPI000B487980	UniProt:A0A287DWD6	MapMan:3.2.2.4.3	:	:

Description

No Description!

Coordinates

chrchrUn:+:30491796..30502848

Molecular Weight (calculated)

56011.3 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.389

Length

1013 amino acids

Sequence
(BLAST)

0001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXNANQQPLV DGDELKITED EEQHEPEMQE YVRKDVDLQA
0101: LKRRLEELAD GNYSIGNKCF VFPELVKADS VIDLYLNRSM SALASEPDIL IKGAFNGWRW NHFTERLHKS ELSGDWWCCK LYIPKQAYRL DFVFFNGDTV
0201: YENNSYNDFV LHIESDIDEH SFEDFLLEEK QRELERLAAE EAERERQAEE ERRKEEERAA MEADRAQAKA EVEMTRNNLQ HVLGLASRYA NNLWYIEPNT
0301: YKGGDRVRLY YNRSSGPLKH KNEIWLHGSY NNWTDGPSIV ERLVKSDEQD GDWWYANVTL PESALVLDWV FADGPPGNAR KYDNNGKRDF HAAVSKSISE
0401: DLFWVKEEHR IFERLQRERK EKEDAGRRKA EITARMKAEM KEKTMREFLL SQKHIVYTEP LEVRAGMTVD VLYNPSNTVL NGSPEVWFRC SFNRWTHPSG
0501: PLPPQKMVNA ENGSHLQATV RVPLDAYXXX XXXCGSGACL TGESRDGLDP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXX

Best Arabidopsis Sequence Match ( AT1G11720.1 )
(BLAST)

0001: MISYFLNQDF SRKKQGRMAA SGPKSSGPRG FGRRTTVGSA QKRTQKKNGE KDSNATSTAT NEVSGISKLP AAKVDVQKQS SVVLNERNVL DRSDIEDGSD
0101: RLDKKTTDDD DLLEQKLKLE RENLRRKEIE TLAAENLARG DRMFVYPVIV KPDEDIEVFL NRNLSTLNNE PDVLIMGAFN EWRWKSFTRR LEKTWIHEDW
0201: LSCLLHIPKE AYKMDFVFFN GQSVYDNNDS KDFCVEIKGG MDKVDFENFL LEEKLREQEK LAKEEAERER QKEEKRRIEA QKAAIEADRA QAKAETQKRR
0301: ELLQPAIKKA VVSAENVWYI EPSDFKAEDT VKLYYNKRSG PLTNSKELWL HGGFNNWVDG LSIVVKLVNA ELKDVDPKSG NWWFAEVVVP GGALVIDWVF
0401: ADGPPKGAFL YDNNGYQDFH ALVPQKLPEE LYWLEEENMI FRKLQEDRRL KEEVMRAKME KTARLKAETK ERTLKKFLLS QKDVVYTEPL EIQAGNPVTV
0501: LYNPANTVLN GKPEVWFRGS FNRWTHRLGP LPPQKMEATD DESSHVKTTA KVPLDAYMMD FVFSEKEDGG IFDNKNGLDY HLPVVGGISK EPPLHIVHIA
0601: VEMAPIAKVG GLGDVVTSLS RAVQELNHNV DIVFPKYDCI KHNFVKDLQF NRSYHWGGTE IKVWHGKVEG LSVYFLDPQN GLFQRGCVYG CADDAGRFGF
0701: FCHAALEFLL QGGFHPDILH CHDWSSAPVS WLFKDHYTQY GLIKTRIVFT IHNLEFGANA IGKAMTFADK ATTVSPTYAK EVAGNSVISA HLYKFHGIIN
0801: GIDPDIWDPY NDNFIPVPYT SENVVEGKRA AKEELQNRLG LKSADFPVVG IITRLTHQKG IHLIKHAIWR TLERNGQVVL LGSAPDPRIQ NDFVNLANQL
0901: HSSHGDRARL VLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGA VPVVRKTGGL FDTVFDVDHD KERAQAQVLE PNGFSFDGAD APGVDYALNR
1001: AISAWYDGRE WFNSLCKTVM EQDWSWNRPA LEYLELYHSA RK

Arabidopsis Description

ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.