Factsheet for HORVU7Hr1G038420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G01180.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G093800.2	Wheat	plastid	85.51	91.73
TraesCS7D01G190100.1	Wheat	plastid	85.4	91.49
TraesCS7A01G189000.1	Wheat	plastid	84.81	91.21
KRH01182	Soybean	cytosol	23.95	77.07
KXG19644	Sorghum	plastid	63.78	70.91
Zm00001d037234_P005	Maize	plastid	60.86	69.01
CDY34695	Canola	plastid	11.33	67.83
Os06t0229800-01	Rice	plastid	61.45	64.94
Bra021486.1-P	Field mustard	endoplasmic reticulum	16.0	64.93
HORVU6Hr1G075950.4	Barley	plastid	50.47	64.0
CDY43274	Canola	plastid	47.66	58.45
CDY37538	Canola	plastid	45.91	58.05
KRG93537	Soybean	plastid	49.18	54.39
KRH18473	Soybean	plastid	48.72	53.74
VIT_14s0108g00940.t01	Wine grape	plastid	49.07	52.5
Solyc02g088000.2.1	Tomato	nucleus, plastid	47.08	52.47
PGSC0003DMT400003356	Potato	cytosol	46.85	52.28
Bra039138.1-P	Field mustard	plastid	47.08	52.27
AT3G01180.1	Thale cress	plastid	48.01	51.89
KRH15937	Soybean	plastid	7.48	49.23
HORVU1Hr1G035960.19	Barley	cytosol, plastid	45.21	48.19
CDY55806	Canola	plastid	30.84	47.74
Bra021487.1-P	Field mustard	cytosol	19.04	43.94
HORVU7Hr1G025390.4	Barley	cytosol, plastid	28.39	42.26
CDY34693	Canola	endoplasmic reticulum, golgi	17.76	38.19
HORVU7Hr1G012380.5	Barley	plastid	24.77	35.16
HORVU2Hr1G090980.3	Barley	plastid	23.36	33.73
HORVU1Hr1G080950.5	Barley	plastid	20.44	18.31
HORVU2Hr1G106410.9	Barley	cytosol	20.21	13.02
HORVU1Hr1G021590.5	Barley	mitochondrion	19.86	10.67
HORVU0Hr1G005550.1	Barley	cytosol	0.47	2.04
HORVU0Hr1G005540.2	Barley	cytosol	2.34	1.97

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A287W4F7	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
EnsemblPlantsGene:HORVU7Hr1G038420	EnsemblPlants:HORVU7Hr1G038420.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF371	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000B47E9D5	SEG:seg

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:A0A287W4F7]

Coordinates

chrchr7H:+:97658666..97669232

Molecular Weight (calculated)

92979.5 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.334

Length

856 amino acids

Sequence
(BLAST)

001: GHFLGLTPCV YPTQSTLQLQ SSPAHCRFCP PIVPSPAPIP AAAMSSAVAS PASFLALASA SPGRSSRRRA RVGASPTRAG AGRLQWRPSP LQRTARDGAV
101: AARAAGIDDA APGRQPRARR YGAATKVADP VKTLDRDAAE GGGPSPPAPR QDAARLPSKN GTLINGENKP TGGGGATKDS GLPTPARAPH LSIQNRVPVN
201: GENKHKVASP PTSIVDVASP GSAANISISN KVPPSVVPAK KTPPSSVFPA KKAPPSSVVP AKKTLPSSGS NFVSSASAPR LDTVSDVELA QKKDALIVKE
301: APKPKALSAP AAPAVQEDLW DFKKYIGFEE PVEAKDDGSA VADDAGSFEH HQNHDSGPLA GENVMNVVVV AAECSPWCKT GGLGDVAGAL PKALAKRGHR
401: VMVVVPRYGD YEEAYDVGVR KYYKAAGQDM EVNYFHAYID GVDFVFIDAP LFRHRQQDIY GGSRQEIMKR MILFCKAAVE VPWHVPCGGV PYGDGNLVFI
501: ANDWHTALLP VYLKAYYRDH GLMQYSRSVM VIHNIAHQGR GPVDEFPFTE LPEHYLEHFR LYDPVGGEHA NYFAAGLKMA DQVVVVSPGY LWELKTVEGG
601: WGLHDIIRQN DWKTRGIVNG IDNMEWNPEV DVHLKSDGYT NFSLKTLDSG KRQCKEALQR ELGLQVRGDV PLLGFIGRLD GQKGVEIIAD AMPWIVSQDV
701: QLVMLGTGRH DLESMLQHFE REHHDKVRGW VGFSVRLAHR ITAGADALLM PSRFEPCGLN QLYAMAYGTI PVVHAVGGLR DTVPPFDPFN HSGLGWTFDR
801: AEAHKLIEAL GHCLRTYRDH KESWRGLQER GMSQDFSWEH AAKLYEDVLV QAKYQW

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.