Factsheet for Zm00001d037234_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19644	Sorghum	plastid	89.8	88.05
KRH01182	Soybean	cytosol	27.81	78.95
CDY34695	Canola	plastid	13.91	73.43
Bra021486.1-P	Field mustard	endoplasmic reticulum	19.21	68.72
TraesCS7B01G093800.2	Wheat	plastid	70.46	66.67
TraesCS7A01G189000.1	Wheat	plastid	69.67	66.08
TraesCS7D01G190100.1	Wheat	plastid	69.8	65.96
Os06t0229800-01	Rice	plastid	69.01	64.32
Zm00001d018033_P001	Maize	plastid	56.16	61.63
Zm00001d052263_P001	Maize	plastid	56.82	61.29
HORVU7Hr1G038420.1	Barley	plastid	69.01	60.86
CDY43274	Canola	plastid	53.91	58.31
CDY37538	Canola	plastid	51.52	57.46
Solyc02g088000.2.1	Tomato	nucleus, plastid	53.38	52.47
KRG93537	Soybean	plastid	53.77	52.45
KRH18473	Soybean	plastid	53.64	52.19
PGSC0003DMT400003356	Potato	cytosol	52.98	52.15
KRH15937	Soybean	plastid	8.87	51.54
Bra039138.1-P	Field mustard	plastid	52.45	51.36
AT3G01180.1	Thale cress	plastid	53.77	51.26
VIT_14s0108g00940.t01	Wine grape	plastid	53.91	50.88
Zm00001d014150_P005	Maize	plastid	48.34	47.16
CDY55806	Canola	plastid	33.91	46.29
Zm00001d045261_P006	Maize	plastid	32.19	43.39
Bra021487.1-P	Field mustard	cytosol	20.53	41.78
CDY34693	Canola	endoplasmic reticulum, golgi	19.07	36.18
Zm00001d033937_P002	Maize	plastid	26.89	33.33
Zm00001d045462_P001	Maize	plastid	26.89	33.33
Zm00001d033690_P001	Maize	cytosol, plastid	14.04	31.18
Zm00001d019479_P004	Maize	plastid	25.3	30.51
Zm00001d029360_P001	Maize	cytosol	9.93	30.0
Zm00001d027242_P002	Maize	plastid	17.48	22.53
Zm00001d010821_P002	Maize	plastid	22.38	18.59
Zm00001d026337_P013	Maize	plastid	21.06	13.35
Zm00001d002256_P012	Maize	plastid	20.66	13.13
Zm00001d051976_P002	Maize	plastid	8.87	12.79
Zm00001d000002_P002	Maize	plastid	21.85	9.84

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A1D6LVT8	ProteinID:AQK83366.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371
SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00084558CE	EnsemblPlantsGene:Zm00001d037234	EnsemblPlants:Zm00001d037234_P005
EnsemblPlants:Zm00001d037234_T005	SEG:seg	:	:	:	:

Description

sugary2Sugary2

Coordinates

chr6:+:117124191..117128209

Molecular Weight (calculated)

83369.2 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.225

Length

755 amino acids

Sequence
(BLAST)

001: MSRARVGSSP FHTGASLSFA FWAPPSPPRA PRDAALVRAE AEAGGKDAPP ERSGDAARLP RARRNAVSKR RDPLQPVGRY GSATGNTART GAASCQNAAL
101: ADVEIKSIVA APPTSIVKFP APGYRMILPS GDIAPETVLP APKPLHESPA VNSVPPVSIP NPDTDGIAAL AEKKYAQVDG DSNGIAPPTV EPLVQEATWD
201: FKKYIGFDEP DEAKDDSRVG ADDAGSFEHY GDNDSGPLAG ENVMNVIVVA AECGLGDVVG ALPKALARRG HRVMVVVPRY GDYVEAFDMG IRKYYKAAGQ
301: ASMHFLMELV LNFVYFQTII RFCFDLQDLE VNYFHAFIDG VDFVFIDAPL FRHRQDDIYG GSRQEIMKRM ILFCKVAVEV PWHVPCGGVC YGDGNLVFIA
401: NDWHTALLPV YLKAYYRDHG LMQYTRSVLV IHNIAHQGRG PVDEFPYMDL PEHYLQHFEL YDPVGGEHAN IFAAGLKMAD RVVTVSRGYL WELKTVEGGW
501: GLHDIIRSND WKINGIVNGI DHQEWNPKVD VHLRSDGYTN YSLETLDAGK RQCKAALQRE LGLEVRDDVP LLGFIGRLDG QKGVDIIGDA MPWIAGQDVQ
601: LVMLGTGRAD LERMLQHLER EHPNKVRGWV GFSVPMAHRI TAGADVLVMP SRFEPCGLNQ LYAMAYGTVP VVHAVGGLRD TVAPFDPFSD AGLGWTFDRA
701: EANKLIEALR HCLDTYRNYE ESWKSLQARG MSQDLSWDHA AELYEDVLVK AKYQW

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.