CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18473	Soybean	plastid	94.06	93.81
KRH01182	Soybean	cytosol	29.46	85.71
VIT_14s0108g00940.t01	Wine grape	plastid	67.05	64.88
Solyc02g088000.2.1	Tomato	nucleus, plastid	61.76	62.24
TraesCS6D01G287000.1	Wheat	plastid	53.23	62.14
PGSC0003DMT400003356	Potato	cytosol	60.98	61.54
HORVU6Hr1G075950.4	Barley	plastid	53.36	61.19
TraesCS6B01G336400.1	Wheat	plastid	53.23	61.13
TraesCS6A01G307800.1	Wheat	plastid	53.23	60.95
Os02t0744700-01	Rice	nucleus	52.07	59.53
Zm00001d018033_P001	Maize	plastid	52.45	59.01
EES05532	Sorghum	plastid	53.62	58.95
Zm00001d052263_P001	Maize	plastid	53.23	58.86
OQU91730	Sorghum	cytosol	51.68	58.48
TraesCS1B01G155700.3	Wheat	plastid	53.88	56.12
Os10t0437600-00	Rice	plastid	54.13	55.94
TraesCS1A01G137200.1	Wheat	plastid	53.75	55.39
TraesCS1D01G138100.2	Wheat	plastid	53.62	55.26
Zm00001d014150_P005	Maize	plastid	54.26	54.26
Zm00001d037234_P005	Maize	plastid	52.45	53.77
KXG19644	Sorghum	plastid	53.36	53.64
KRH15937	Soybean	plastid	8.91	53.08
TraesCS7B01G093800.2	Wheat	plastid	54.52	52.88
TraesCS7A01G189000.1	Wheat	plastid	54.13	52.64
TraesCS7D01G190100.1	Wheat	plastid	54.26	52.57
HORVU1Hr1G035960.19	Barley	cytosol, plastid	53.49	51.56
Os06t0229800-01	Rice	plastid	53.75	51.36
GSMUA_Achr1P24640_001	Banana	cytosol	12.92	50.51
HORVU7Hr1G038420.1	Barley	plastid	54.39	49.18
KRH53506	Soybean	plastid	34.75	42.43
KRH64431	Soybean	plastid	35.27	41.94
KRH16258	Soybean	extracellular	6.46	36.76
KRH47803	Soybean	nucleus	29.07	36.35
KRG92546	Soybean	plastid	28.29	36.2
KRH06370	Soybean	nucleus, plastid	28.94	36.19
KRH34245	Soybean	plastid	28.29	36.02
KRH39530	Soybean	cytosol	8.14	22.91
KRH74428	Soybean	plastid	16.15	18.27
KRH58438	Soybean	nucleus	23.26	18.2
KRH42312	Soybean	nucleus	22.61	17.68
KRH51091	Soybean	plastid	22.74	16.27
KRH20852	Soybean	plastid	22.87	15.4
KRH11434	Soybean	plastid	22.61	15.01

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100301884	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	EMBL:ACUP02011587	UniProt:B9VJS7
EMBL:FJ561741	EnsemblPlantsGene:GLYMA_19G022900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0019252	InterPro:GS/SS	EnsemblPlants:KRG93537	ProteinID:KRG93537	ProteinID:KRG93537.1	HAMAP:MF_00484
PFAM:PF08323	PFAM:PF13692	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	MetaCyc:PWY-622	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00019223C6	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:2624964..2633158

Molecular Weight (calculated)

86578.8 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.386

Length

774 amino acids

Sequence
(BLAST)

001: MASMGSLPFL VEANADSTVM MMMLHNRNHK FSSSKFSTLN ASSLVRGWGR GRVKHRCSRG LLCLVEKNKH ISALGKSSGT SEDKDDSDEV LQATIEKSKK
101: VLALQRELLQ QISERKKLVS SINSETTPEI GDSISYEHSD KSLSSDSNPQ KGSARRGSAF ENENGGVVSS NYVESIEKEI PDVSFVGIDL GLDKSEEEDD
201: NLSPVEKASP RLYVDEQLNS KRYEIIKPDT LPSDIPCSTE TFSRKIEILE ALSESSTKEV ANEADNVEGE GEKPPPLAGA NVMNVILVAA ECAPFVKTGG
301: LGDVVGSLPK ALARRGHRVM VVVPRYSHYA EAQDLGVRKR YKVDGQDMEV TYFHSYIDGV DFVFIDSPNF RHLQDNIYRG SREDILKRMV LFCKAAAEVP
401: WHVPCGGVCY GDGNLAFIAN DWHTALLPVY LKAYYRDHGI MKYTRSVLVI HNIAHQGRGP VDDFRYTDLP EHYIDLFKLY DPVGGEHFNI FAAGLKAADR
501: IVTVSHGYAW EIKTSEGGWG LHGIIYENDW KLRGIVNGID TKDWNPKFDV HLKSDGYTNY TLETLQSGKR RCKAALQKEL GFPVREDVPL LGFIGRLDQQ
601: KGIDLIAESI PWIVSQDVQL VMLGTGRPDL EDMLRQFESQ HRDKVRGWVG FSVKMAHRIT AGADILLMPS RFEPCGLNQL YAMNYGTIPV VHAVGGLRDT
701: VKPFNPFEES GLGWTFDSAE TNKLINAIGN CLLTFRQYKQ SWEGLQRRGM TQDLSWDNAA QQYEEVLVAA KYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.