Factsheet for TraesCS6B01G336400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G075950.4	Barley	plastid	95.1	94.96
TraesCS6D01G287000.1	Wheat	plastid	92.28	93.82
TraesCS6A01G307800.1	Wheat	plastid	93.32	93.05
KRH01182	Soybean	cytosol	30.71	77.82
Os02t0744700-01	Rice	nucleus	75.67	75.33
Zm00001d018033_P001	Maize	plastid	74.48	72.97
Zm00001d052263_P001	Maize	plastid	75.52	72.71
EES05532	Sorghum	plastid	75.82	72.59
CDY34695	Canola	plastid	15.28	72.03
Bra021486.1-P	Field mustard	endoplasmic reticulum	21.07	67.3
CDY43274	Canola	plastid	62.02	59.89
CDY37538	Canola	plastid	59.64	59.38
TraesCS7B01G093800.2	Wheat	plastid	64.39	54.39
KRG93537	Soybean	plastid	61.13	53.23
KRH18473	Soybean	plastid	61.28	53.22
AT3G01180.1	Thale cress	plastid	62.17	52.9
Bra039138.1-P	Field mustard	plastid	59.94	52.4
TraesCS1B01G155700.3	Wheat	plastid	57.57	52.22
Solyc02g088000.2.1	Tomato	nucleus, plastid	59.5	52.21
PGSC0003DMT400003356	Potato	cytosol	59.2	52.02
VIT_14s0108g00940.t01	Wine grape	plastid	60.53	51.0
KRH15937	Soybean	plastid	9.64	50.0
TraesCS7B01G018600.1	Wheat	cytosol	36.35	47.02
CDY55806	Canola	plastid	38.43	46.84
Bra021487.1-P	Field mustard	cytosol	22.11	40.16
CDY34693	Canola	endoplasmic reticulum, golgi	20.62	34.92
TraesCS2B01G390700.1	Wheat	plastid	30.27	34.06
TraesCS1B01G368500.1	Wheat	plastid	24.78	18.29
TraesCS2B01G491700.2	Wheat	plastid	25.52	13.48
TraesCS1B01G119300.1	Wheat	plastid	24.93	10.43

Protein Annotations

EnsemblPlants:TraesCS6B01G336400.1	EnsemblPlantsGene:TraesCS6B01G336400	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	PANTHER:PTHR12526
PANTHER:PTHR12526:SF371	PFAM:PF08323	PFAM:PF13692	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF53756
TIGR:cd03791	TIGRFAMs:TIGR02095	MapMan:3.2.2.4.2	:	:	:

Description

No Description!

Coordinates

chr6B:+:591576717..591580986

Molecular Weight (calculated)

73552.1 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.250

Length

674 amino acids

Sequence
(BLAST)

001: MSGYIASSSA AFLLLVASSS CSSSSPRRWR SSSPRSFAAA GTRLHWERRG FSRDGPVPCR SPCAAAGGED GAAAGESSKE GVAGLRGKLK AAENEDPVSQ
101: KSVASAPRLD SSVAEQNGAA ATRSKADPSA PVSAAASGYW KDVVVAEQVG TKVDTGGDAA EVSRSPVDSE NKGSAPLAGP NVMNVIVVAS ECAPFCKTGG
201: LGDVVGALPK ALARRGHRVM VVIPKYGDYA EARDLGVRKR YKVAGQDSEV SYFHSYIDGV DFVFLEAPPF RHRHNDIYGG ERPDVLKRMI LFCKAAVEVP
301: WYAPCGGTIY GDGNLVFIAN DWHTALLPVY LKAYYRDNGL MQYTRSVLVI HNIAHQGRGP VDDFNIMDLP DHYMGHFKLH DPLGGEHNNV FAAGLKMADR
401: VVTVSHGYMW ELKTVEGGWG LHDIINQNDW KLDGIVNGID TAEWNPAVDV HLHSDDYTNY TRDTLDIGKR QCKAALQREL GLQVRDDVPL IGFIGRLDHQ
501: KGVDIIAAAM PWITQQDVQL VMLGTGRPDL EDMLRRFEGE HRDKVRGWVG FSVRMAHRIT AGADVLLMPS LFEPCGLNQL YAMAYGTVPV VHAVGGLRDT
601: VAPFDPFGGT GLGWTFDRAD AGRMIDALGH CLNTYWNYKE SWRGLQVRGM SQDLSWDHAA ELYENVLVKA KYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.