Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G336400.1 | Wheat | plastid | 93.82 | 92.28 |
| HORVU6Hr1G075950.4 | Barley | plastid | 93.82 | 92.15 |
| TraesCS6A01G307800.1 | Wheat | plastid | 93.21 | 91.42 |
| KRH01182 | Soybean | cytosol | 31.22 | 77.82 |
| Os02t0744700-01 | Rice | nucleus | 76.17 | 74.59 |
| Zm00001d052263_P001 | Maize | plastid | 77.98 | 73.86 |
| Zm00001d018033_P001 | Maize | plastid | 76.47 | 73.69 |
| EES05532 | Sorghum | plastid | 77.38 | 72.87 |
| CDY34695 | Canola | plastid | 15.54 | 72.03 |
| Bra021486.1-P | Field mustard | endoplasmic reticulum | 21.57 | 67.77 |
| CDY43274 | Canola | plastid | 63.05 | 59.89 |
| CDY37538 | Canola | plastid | 60.33 | 59.08 |
| TraesCS7D01G190100.1 | Wheat | plastid | 64.25 | 53.32 |
| KRG93537 | Soybean | plastid | 62.14 | 53.23 |
| KRH18473 | Soybean | plastid | 62.29 | 53.22 |
| AT3G01180.1 | Thale cress | plastid | 62.44 | 52.27 |
| Bra039138.1-P | Field mustard | plastid | 60.63 | 52.14 |
| Solyc02g088000.2.1 | Tomato | nucleus, plastid | 59.88 | 51.69 |
| PGSC0003DMT400003356 | Potato | cytosol | 59.58 | 51.5 |
| TraesCS1D01G138100.2 | Wheat | plastid | 57.92 | 51.13 |
| VIT_14s0108g00940.t01 | Wine grape | plastid | 61.24 | 50.75 |
| KRH15937 | Soybean | plastid | 9.5 | 48.46 |
| CDY55806 | Canola | plastid | 38.61 | 46.29 |
| Bra021487.1-P | Field mustard | cytosol | 22.47 | 40.16 |
| TraesCS7D01G117800.1 | Wheat | plastid | 37.71 | 38.17 |
| CDY34693 | Canola | endoplasmic reticulum, golgi | 20.97 | 34.92 |
| TraesCS7D01G064300.1 | Wheat | plastid | 31.37 | 34.44 |
| TraesCS2D01G369800.1 | Wheat | plastid | 30.32 | 33.56 |
| TraesCS1D01G356900.1 | Wheat | plastid | 25.64 | 18.62 |
| TraesCS2D01G468900.2 | Wheat | endoplasmic reticulum, golgi | 25.19 | 11.9 |
| TraesCS1D01G100100.1 | Wheat | cytosol | 24.43 | 10.04 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G287000.1 | EnsemblPlantsGene:TraesCS6D01G287000 | Gene3D:3.40.50.2000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 |
| GO:GO:0016740 | HAMAP:MF_00484 | InterPro:GS/SS | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 | PANTHER:PTHR12526 |
| PANTHER:PTHR12526:SF371 | PFAM:PF08323 | PFAM:PF13692 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF53756 |
| TIGR:cd03791 | TIGRFAMs:TIGR02095 | MapMan:3.2.2.4.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:395694431..395700200
Molecular Weight (calculated)
72275.8 Da
IEP (calculated)
7.112
GRAVY (calculated)
-0.237
Length
663 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYIASSSA AFLLLVASSS SSTSPRRLRS SALRSYGAAG TPLHWARRGF SRDGLVPCRR GSAGESSRQG VSGQRGKLKA AENEDAVSQK AAASAPRLNS
101: SAAEQNGAAG SKSEVDPSAP LSAAASGYWK DVVVAEQVGA KVDTGGDAAE VSSSPVDSKN MGPGPLAGPN VMNVIVVASE CAPFCKTGGL GDVVGALPKA
201: LARRGHRVMV VIPKYGDYAE ARDLGVRKRY KVAGQDSEVS YFHSYIDGVD FVFLEAPPFR HRHNDIYGGE RPDVLKRMIL FCKAAVEVPW YAPCGGTIYG
301: DGNLVFIAND WHTALLPVYL KAYYRDNGLM QYTRSVLVIH NIAHQGRGPV DDFNIMDLPA HYIDHFKLHD PLGGEHNNVF AAGLKMADRV VTVSHGYMWE
401: LKTTEGGWGL HDIINQNDWK LDGIVNGIDT AEWNPAVDVH LHSDDYTNYT RDTLDTGKRQ CKAALQRELG LQVRDGVPLI GFIGRLDHQK GVDIIAAAMP
501: WIAQQDVQLV MLGTGRPDLE DMLRRFEGEH RDKVRGWVGF SVRMAHRITA GADVLLMPSL FEPCGLNQLY AMAYGTVPVV HAVGGLRDTV APFDPFGGTG
601: LGWTFDRADA GRMIDALGHC LNTYWNYKES WRGLQVRGMS QDLSWDHAAE LYENVLVKAK YQW
101: SAAEQNGAAG SKSEVDPSAP LSAAASGYWK DVVVAEQVGA KVDTGGDAAE VSSSPVDSKN MGPGPLAGPN VMNVIVVASE CAPFCKTGGL GDVVGALPKA
201: LARRGHRVMV VIPKYGDYAE ARDLGVRKRY KVAGQDSEVS YFHSYIDGVD FVFLEAPPFR HRHNDIYGGE RPDVLKRMIL FCKAAVEVPW YAPCGGTIYG
301: DGNLVFIAND WHTALLPVYL KAYYRDNGLM QYTRSVLVIH NIAHQGRGPV DDFNIMDLPA HYIDHFKLHD PLGGEHNNVF AAGLKMADRV VTVSHGYMWE
401: LKTTEGGWGL HDIINQNDWK LDGIVNGIDT AEWNPAVDVH LHSDDYTNYT RDTLDTGKRQ CKAALQRELG LQVRDGVPLI GFIGRLDHQK GVDIIAAAMP
501: WIAQQDVQLV MLGTGRPDLE DMLRRFEGEH RDKVRGWVGF SVRMAHRITA GADVLLMPSL FEPCGLNQLY AMAYGTVPVV HAVGGLRDTV APFDPFGGTG
601: LGWTFDRADA GRMIDALGHC LNTYWNYKES WRGLQVRGMS QDLSWDHAAE LYENVLVKAK YQW
001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW
Arabidopsis Description
SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.