CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY08148
CDY24170
CDY36943
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	CDY24170	AT3G47620.1	21798944
AT3G01180.1	CDY36943	AT3G47620.1	21798944
AT3G01180.1	CDY08148	AT3G49580.1	21798944
AT3G01180.1	CDX70521	AT5G13810.1	21798944
AT3G01180.1	CDX78539	AT5G13810.1	21798944
AT3G01180.1	CDY67732	AT5G13810.1	21798944
AT3G01180.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021487.1-P	Field mustard	cytosol	86.18	92.45
CDY55806	Canola	plastid	54.52	39.24
AT3G01180.1	Thale cress	plastid	61.06	30.68
CDY43274	Canola	plastid	51.51	29.37
CDY37538	Canola	plastid	46.73	27.47
GSMUA_Achr1P24640_001	Banana	cytosol	12.56	25.25
CDY34695	Canola	plastid	8.29	23.08
Solyc02g088000.2.1	Tomato	nucleus, plastid	43.72	22.66
PGSC0003DMT400003356	Potato	cytosol	43.47	22.56
VIT_14s0108g00940.t01	Wine grape	plastid	44.22	22.0
EES05532	Sorghum	plastid	37.94	21.45
Os02t0744700-01	Rice	nucleus	36.18	21.27
Zm00001d052263_P001	Maize	plastid	36.93	21.0
TraesCS6D01G287000.1	Wheat	plastid	34.92	20.97
CDY71840	Canola	plastid	15.83	20.86
TraesCS6A01G307800.1	Wheat	plastid	35.18	20.71
Zm00001d018033_P001	Maize	plastid	35.68	20.64
TraesCS6B01G336400.1	Wheat	plastid	34.92	20.62
OQU91730	Sorghum	cytosol	35.18	20.47
HORVU6Hr1G075950.4	Barley	plastid	34.42	20.3
KXG19644	Sorghum	plastid	37.94	19.61
TraesCS7D01G190100.1	Wheat	plastid	38.94	19.4
TraesCS7A01G189000.1	Wheat	plastid	38.69	19.35
TraesCS7B01G093800.2	Wheat	plastid	38.69	19.3
Os10t0437600-00	Rice	plastid	35.93	19.09
Zm00001d037234_P005	Maize	plastid	36.18	19.07
TraesCS1B01G155700.3	Wheat	plastid	35.18	18.84
TraesCS1A01G137200.1	Wheat	plastid	35.43	18.77
TraesCS1D01G138100.2	Wheat	plastid	34.92	18.51
Zm00001d014150_P005	Maize	plastid	35.93	18.48
Os06t0229800-01	Rice	plastid	36.93	18.15
HORVU7Hr1G038420.1	Barley	plastid	38.19	17.76
HORVU1Hr1G035960.19	Barley	cytosol, plastid	34.67	17.19
CDX73274	Canola	plastid	16.33	17.02
CDX88091	Canola	plastid	21.36	13.06
CDX80428	Canola	plastid	21.36	13.06
CDY08902	Canola	plastid	19.35	7.55
CDX76534	Canola	plastid	19.35	7.55
CDY45619	Canola	plastid	11.81	7.13
CDY08760	Canola	plastid	11.31	6.56
CDY21007	Canola	plastid	16.08	6.02
CDY31209	Canola	plastid	15.58	5.78
CDY49799	Canola	mitochondrion	15.58	5.71
CDX97980	Canola	plastid	15.58	5.68
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY34693	EnsemblPlantsGene:GSBRNA2T00057206001	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	MetaCyc:PWY-622
PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	PFAM:PF08323	ProteinID:CDY34693	ProteinID:CDY34693.1	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0004EE17E9	UniPathway:UPA00164	UniProt:A0A078HD22	MapMan:35.1	:

Description

BnaA01g33320DBnaA01g33320D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078HD22]

Coordinates

chrLK032340:+:2..3207

Molecular Weight (calculated)

44054.3 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.273

Length

398 amino acids

Sequence
(BLAST)

001: LSPSLILMVC FFFFKTLKNY IWDALNCSLP LVFKILSLHL ILLLFQRKLV SSIKDTTPNL DHAKPSAKED YGSSSSVSAI KKEENGNASV SPSNYGKSFL
101: NKLPEANKTS PLERSKQSSA SVQSSSPSGV ASSGKPWSSV VVASSVDPPY KPSSKQTSDP VTLVLVHPLS SYLTKTPSIK TEEYMETKEE KTHEEEASSD
201: TNEPVRDEEK PSPLAEANVM NVILVAAECA PFSKTGGLGD VAGALPKALA RLGHRVMVVV PRYAEYEEAK DVGVRKRYEV AGQDMEVMYF HGVDFVFIDS
301: PVFRHLSNNI YGGNRLGRGP VHDFSYVDLP GHYLDSFKLV HTVSHGYSWE VKTLEGGWGL HNIISENDWK FRGIVKSFKI HRTSIEEFSI NFSTNIKI

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.