Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008801.1-P | Field mustard | plastid | 97.38 | 97.38 |
| CDY67732 | Canola | plastid | 94.38 | 97.3 |
| CDX78539 | Canola | cytosol, plastid | 81.27 | 82.82 |
| CDX70521 | Canola | plastid | 82.02 | 81.72 |
| AT5G13810.1 | Thale cress | plastid | 82.4 | 80.29 |
| VIT_13s0019g00340.t01 | Wine grape | plastid | 59.18 | 58.96 |
| Solyc11g005270.1.1 | Tomato | cytosol | 40.45 | 56.84 |
| KRH62918 | Soybean | cytosol, plastid | 51.69 | 53.7 |
| KRH13399 | Soybean | plastid | 52.81 | 52.81 |
| KRH20755 | Soybean | plastid | 53.18 | 52.4 |
| Solyc03g078380.1.1 | Tomato | cytosol | 50.94 | 52.11 |
| PGSC0003DMT400047487 | Potato | cytosol | 50.94 | 51.52 |
| PGSC0003DMT400015465 | Potato | cytosol | 49.06 | 47.81 |
| CDX80893 | Canola | cytosol | 15.73 | 38.53 |
| CDY11274 | Canola | cytosol | 15.73 | 38.53 |
| CDX74801 | Canola | cytosol | 23.6 | 37.72 |
| CDY00113 | Canola | cytosol | 18.73 | 37.59 |
| CDY59509 | Canola | cytosol, plastid | 34.46 | 36.51 |
| CDY32696 | Canola | cytosol, plastid | 34.08 | 36.26 |
| CDY32794 | Canola | peroxisome | 33.71 | 34.75 |
| CDY14762 | Canola | cytosol, plastid | 40.45 | 29.83 |
| CDX98926 | Canola | cytosol | 26.59 | 29.58 |
| CDX74802 | Canola | cytosol, mitochondrion | 27.34 | 29.55 |
| CDY14169 | Canola | cytosol | 26.97 | 29.39 |
| CDY67834 | Canola | cytosol | 26.59 | 29.34 |
| CDY18861 | Canola | mitochondrion | 26.97 | 29.27 |
| CDY06932 | Canola | plastid | 39.7 | 28.8 |
| CDY01245 | Canola | cytosol | 27.72 | 28.57 |
| CDX76039 | Canola | plastid | 37.45 | 28.49 |
| CDY06138 | Canola | plastid | 41.57 | 28.1 |
| CDX93821 | Canola | cytosol | 27.34 | 28.08 |
| CDX72074 | Canola | plastid | 41.2 | 27.64 |
| CDY30970 | Canola | plastid | 37.83 | 27.45 |
| CDY22520 | Canola | plastid | 40.45 | 26.93 |
| CDX90765 | Canola | cytosol | 26.59 | 26.59 |
| CDX81007 | Canola | cytosol, mitochondrion | 22.1 | 26.58 |
| CDY35418 | Canola | plastid | 39.7 | 26.43 |
| CDY05109 | Canola | cytosol | 26.22 | 26.42 |
| CDY55763 | Canola | cytosol, mitochondrion | 21.72 | 26.13 |
| CDY04039 | Canola | cytosol | 29.96 | 23.74 |
| CDY70277 | Canola | cytosol | 29.59 | 23.44 |
| CDY04902 | Canola | nucleus | 30.34 | 23.34 |
| CDY67051 | Canola | cytosol | 32.21 | 22.69 |
| CDY30281 | Canola | cytosol | 32.58 | 22.54 |
| CDY20015 | Canola | cytosol | 32.58 | 21.53 |
| CDY47842 | Canola | cytosol | 28.84 | 21.39 |
| CDX86410 | Canola | cytosol | 32.21 | 20.92 |
| CDY62024 | Canola | cytosol | 28.09 | 20.83 |
| CDX85224 | Canola | cytosol | 32.21 | 20.77 |
| CDY04838 | Canola | mitochondrion | 27.34 | 20.39 |
| CDX80894 | Canola | nucleus | 4.12 | 5.61 |
| CDY11275 | Canola | nucleus | 4.12 | 5.56 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:A0A078JUY2 | UniProt:A0A078JUY2 | EnsemblPlants:CDY70634 | ProteinID:CDY70634 |
| ProteinID:CDY70634.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00004876001 | InterPro:Glutaredoxin | InterPro:IPR002109 |
| PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF84 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| UniParc:UPI0004EDC811 | SEG:seg | : | : | : | : |
Description
BnaA10g29790DBnaA10g29790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUY2]
Coordinates
chrLK042765:-:843..2447
Molecular Weight (calculated)
29986.9 Da
IEP (calculated)
9.327
GRAVY (calculated)
-0.472
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKTKSSSS FFNRSLTIHG HRPTDSTPKS HSLNPSLNRT TSITKFYHPV ETVVETSLKG KVKNLCRLFE GSKSSSKPTS ATPDHPQKLK SNKSVLSESR
101: LSPFLSLNNS VIRLPGTEDR IVVYFTSLRG IRRTYEDCYS VRMIFRGFRV WIDERDVSMD SAYKKELQIA MGEKSSVSLP QVFIMGKHVG GADVVKSLFE
201: IGELAKILKL FPVREPGFVC RCCGDARFIP CSNCSGSKKL YDEDEDRHKR CPECNENGLI RCPDCSS
101: LSPFLSLNNS VIRLPGTEDR IVVYFTSLRG IRRTYEDCYS VRMIFRGFRV WIDERDVSMD SAYKKELQIA MGEKSSVSLP QVFIMGKHVG GADVVKSLFE
201: IGELAKILKL FPVREPGFVC RCCGDARFIP CSNCSGSKKL YDEDEDRHKR CPECNENGLI RCPDCSS
001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
Arabidopsis Description
AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.