Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G31240.1 | CDY03601 | AT1G50420.1 | 21798944 |
| AT1G31240.1 | CDY22795 | AT1G50420.1 | 21798944 |
| AT1G31240.1 | CDY37137 | AT1G50420.1 | 21798944 |
| AT1G31240.1 | CDY45059 | AT1G50420.1 | 21798944 |
| AT1G31240.1 | CDY68881 | AT1G50420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023170.1-P | Field mustard | nucleus | 81.17 | 70.04 |
| AT1G31240.1 | Thale cress | nucleus | 46.03 | 39.71 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 21.34 | 20.08 |
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 21.34 | 18.82 |
| KRH17259 | Soybean | plastid | 21.34 | 18.68 |
| KRH27180 | Soybean | plastid | 12.55 | 18.63 |
| Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 17.99 | 17.99 |
| Solyc02g069170.1.1 | Tomato | mitochondrion | 20.08 | 17.14 |
| EES07408 | Sorghum | mitochondrion, plastid | 17.57 | 17.0 |
| Zm00001d050853_P001 | Maize | cytosol | 15.06 | 15.72 |
| Zm00001d000165_P001 | Maize | mitochondrion | 16.32 | 15.66 |
| KRH72903 | Soybean | cytosol | 17.99 | 14.83 |
| CDY43254 | Canola | nucleus | 21.76 | 14.44 |
| CDX74271 | Canola | cytosol | 22.59 | 14.4 |
| CDY69783 | Canola | nucleus | 21.34 | 14.21 |
| CDX75423 | Canola | nucleus | 19.67 | 13.54 |
| CDX91978 | Canola | cytosol, extracellular, nucleus | 21.76 | 13.37 |
| CDY60474 | Canola | nucleus | 20.92 | 13.26 |
Protein Annotations
| EnsemblPlants:CDY02371 | EnsemblPlantsGene:GSBRNA2T00113867001 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 | ProteinID:CDY02371 | ProteinID:CDY02371.1 |
| SEG:seg | UniParc:UPI0004EEBCF5 | MapMan:15.3.5.3.8 | : | : | : |
Description
BnaA09g25310D
Coordinates
chrLK031933:-:980184..982260
Molecular Weight (calculated)
26783.4 Da
IEP (calculated)
8.058
GRAVY (calculated)
-0.592
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MHNEIADSLA RNARSFHRSL CFIGCSIPVW LLRPPQGSFK IPIVNGLQDT ALSTSDCFPG GSTLHNTESH CLIKSAVLRN LSDFVASAFE IPFAKPLPRL
101: EISGSHGGDS TRTAPSPERR SIPAWLPPFP DSSLYRERYA KERSDRLWEN SDSVIGRETF AETSGVESCR GRSGGRLPLR RASVRFKVER DWSNGGGSCK
201: SNTRLERWRD NKEGEFEVKK KIGEEYIYCA DIDAGEWDM
101: EISGSHGGDS TRTAPSPERR SIPAWLPPFP DSSLYRERYA KERSDRLWEN SDSVIGRETF AETSGVESCR GRSGGRLPLR RASVRFKVER DWSNGGGSCK
201: SNTRLERWRD NKEGEFEVKK KIGEEYIYCA DIDAGEWDM
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.