Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | CDX76383 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX79137 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX82924 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDY27446 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45059 | Canola | cytosol | 92.21 | 74.01 |
| CDY03601 | Canola | cytosol | 92.21 | 50.11 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 36.07 | 49.16 |
| CDY22795 | Canola | cytosol, plastid | 86.48 | 47.52 |
| AT1G50420.1 | Thale cress | cytosol | 90.98 | 46.06 |
| KRH29080 | Soybean | cytosol | 72.95 | 39.12 |
| PGSC0003DMT400011839 | Potato | cytosol | 74.18 | 38.68 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 74.59 | 38.4 |
| Solyc12g099900.1.1 | Tomato | nucleus | 72.95 | 38.03 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 70.9 | 38.02 |
| PGSC0003DMT400058477 | Potato | cytosol | 70.49 | 36.44 |
| Solyc01g008910.2.1 | Tomato | cytosol | 70.08 | 35.92 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 67.21 | 35.27 |
| KRH27822 | Soybean | nucleus, plastid | 66.39 | 34.25 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 62.3 | 34.08 |
| Os06t0211500-00 | Rice | cytosol | 26.64 | 34.03 |
| Os01t0948200-00 | Rice | cytosol | 58.61 | 32.35 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 62.3 | 32.14 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 57.38 | 31.32 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 40.16 | 31.11 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 40.16 | 31.11 |
| Zm00001d042127_P001 | Maize | plastid | 56.97 | 31.1 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 57.79 | 30.99 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 57.38 | 30.91 |
| EES02045 | Sorghum | cytosol, plastid | 56.56 | 30.07 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 38.52 | 29.94 |
| Zm00001d011881_P001 | Maize | cytosol | 54.92 | 29.84 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 36.89 | 28.66 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 36.07 | 28.21 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 15.57 | 26.03 |
| Os12t0138100-00 | Rice | cytosol | 50.0 | 24.8 |
| Os11t0141500-00 | Rice | cytosol | 50.0 | 24.8 |
| Zm00001d023248_P001 | Maize | cytosol | 50.0 | 24.11 |
| CDY64484 | Canola | mitochondrion | 24.18 | 23.98 |
| TraesCSU01G014000.1 | Wheat | cytosol | 28.28 | 23.47 |
| EES16518 | Sorghum | cytosol | 41.8 | 22.67 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 50.82 | 22.46 |
| CDY37137 | Canola | plastid | 87.7 | 22.43 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 50.41 | 22.36 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 50.82 | 22.18 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 50.41 | 22.16 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 38.11 | 21.63 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 38.52 | 21.08 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 38.11 | 20.85 |
| KXG22822 | Sorghum | mitochondrion | 48.36 | 20.45 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 39.34 | 20.21 |
| Os12t0138200-00 | Rice | cytosol | 42.21 | 20.2 |
| OQU77884 | Sorghum | plasma membrane | 37.3 | 20.0 |
| EES09233 | Sorghum | cytosol | 39.75 | 19.92 |
| Os11t0141700-00 | Rice | cytosol | 40.57 | 19.57 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 37.7 | 19.41 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 37.7 | 19.37 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 35.66 | 18.83 |
| Zm00001d052463_P001 | Maize | cytosol | 39.75 | 18.55 |
| CDY50028 | Canola | nucleus, plastid | 31.56 | 18.47 |
| CDY54362 | Canola | plastid | 31.56 | 18.29 |
| OQU77885 | Sorghum | cytosol | 34.43 | 17.43 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 34.43 | 17.25 |
| CDY70426 | Canola | cytosol | 35.25 | 16.96 |
| Zm00001d023247_P001 | Maize | plastid | 38.11 | 16.61 |
| CDY55037 | Canola | cytosol | 34.43 | 16.57 |
| CDY27670 | Canola | cytosol | 26.64 | 16.09 |
| Os05t0378200-00 | Rice | cytosol | 36.07 | 15.97 |
| CDY38434 | Canola | cytosol | 32.38 | 15.49 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 32.79 | 15.24 |
| CDY04092 | Canola | cytosol | 32.38 | 14.79 |
| CDY64837 | Canola | cytosol | 32.38 | 14.58 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 32.38 | 14.21 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 32.79 | 13.99 |
| GSMUA_Achr11P... | Banana | cytosol | 62.7 | 13.88 |
| CDY49199 | Canola | plastid | 34.02 | 13.13 |
| CDY70213 | Canola | plastid | 34.43 | 13.06 |
| Os05t0378500-00 | Rice | plastid | 29.51 | 12.86 |
| CDY45974 | Canola | plastid | 33.61 | 12.71 |
| CDY72338 | Canola | cytosol | 30.33 | 12.65 |
| CDX78219 | Canola | nucleus, plastid | 31.15 | 12.6 |
| CDY47352 | Canola | plastid | 32.79 | 12.56 |
| CDY53846 | Canola | cytosol | 29.51 | 12.35 |
| CDX73496 | Canola | nucleus, plastid | 31.15 | 12.22 |
| CDY43123 | Canola | cytosol, extracellular, plastid | 2.87 | 11.48 |
| CDY50706 | Canola | cytosol, extracellular, plastid | 2.87 | 11.48 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 13.11 | 7.69 |
| CDY43122 | Canola | nucleus | 13.11 | 7.67 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 0.41 | 0.28 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078JTC5 | UniProt:A0A078JTC5 | EnsemblPlants:CDY68881 | ProteinID:CDY68881 | ProteinID:CDY68881.1 |
| GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00080953001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI0004EE7EDF | : |
Description
BnaC05g51400DBnaC05g51400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTC5]
Coordinates
chrLK038191:-:3252..3986
Molecular Weight (calculated)
27474.8 Da
IEP (calculated)
5.987
GRAVY (calculated)
-0.277
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHVIDLDAS EPAQWLALIQ AFNSRPEGPP HLRITGVHLH KEVLDQMAHR LIEEAEKLDI PFQFNPVVSS LDCLNVDQLR VKTGEALAVS SVLQLHTFLA
101: SDSDMSNNNG HSLSGDSASS LPLSNSGKID RFLNAIWGLS PKIMVVTEQH SDHNGSTLME RLLESLYSYA ALFDCLENKI PRTSQDRIKV EKMLFGEEIK
201: NIIACEGSER RERHEKLEKW SQRIDLAGFG NVPLSYYVML QARR
101: SDSDMSNNNG HSLSGDSASS LPLSNSGKID RFLNAIWGLS PKIMVVTEQH SDHNGSTLME RLLESLYSYA ALFDCLENKI PRTSQDRIKV EKMLFGEEIK
201: NIIACEGSER RERHEKLEKW SQRIDLAGFG NVPLSYYVML QARR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.