Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43123 | Canola | cytosol, extracellular, plastid | 100.0 | 100.0 |
| CDY64484 | Canola | mitochondrion | 40.98 | 10.16 |
| VIT_14s0006g00640.t01 | Wine grape | cytosol | 83.61 | 8.96 |
| CDY38434 | Canola | cytosol | 73.77 | 8.82 |
| PGSC0003DMT400040589 | Potato | nucleus | 83.61 | 8.67 |
| Solyc11g011260.1.1 | Tomato | nucleus | 83.61 | 8.67 |
| CDY45059 | Canola | cytosol | 42.62 | 8.55 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 70.49 | 8.19 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 72.13 | 7.91 |
| CDY70426 | Canola | cytosol | 63.93 | 7.69 |
| CDY55037 | Canola | cytosol | 63.93 | 7.69 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 70.49 | 7.52 |
| CDY27670 | Canola | cytosol | 40.98 | 6.19 |
| CDY50028 | Canola | nucleus, plastid | 40.98 | 6.0 |
| CDY54362 | Canola | plastid | 40.98 | 5.94 |
| CDY03601 | Canola | cytosol | 42.62 | 5.79 |
| CDY22795 | Canola | cytosol, plastid | 39.34 | 5.41 |
| CDX78219 | Canola | nucleus, plastid | 39.34 | 3.98 |
| CDX73496 | Canola | nucleus, plastid | 39.34 | 3.86 |
| CDY53846 | Canola | cytosol | 32.79 | 3.43 |
| CDY72338 | Canola | cytosol | 32.79 | 3.42 |
| CDY47352 | Canola | plastid | 32.79 | 3.14 |
| CDY49199 | Canola | plastid | 31.15 | 3.01 |
| CDY45974 | Canola | plastid | 31.15 | 2.95 |
| CDY68881 | Canola | cytosol | 11.48 | 2.87 |
| CDY70213 | Canola | plastid | 29.51 | 2.8 |
| CDY37137 | Canola | plastid | 39.34 | 2.52 |
| CDY04092 | Canola | cytosol | 19.67 | 2.25 |
| CDY64837 | Canola | cytosol | 19.67 | 2.21 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 11.48 | 1.68 |
| CDY43122 | Canola | nucleus | 11.48 | 1.68 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078I207 | UniProt:A0A078I207 | ProteinID:CDY43123.1 | EnsemblPlants:CDY50706 | ProteinID:CDY50706 |
| ProteinID:CDY50706.1 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903506 | EnsemblPlantsGene:GSBRNA2T00097284001 | InterPro:IPR005202 |
| PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | InterPro:TF_DELLA | InterPro:TF_GRAS |
| UniParc:UPI0004EEC4C1 | : | : | : | : | : |
Description
BnaC05g47770DBnaA05g32630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I207]
Coordinates
chrLK032932:-:77583..77768
Molecular Weight (calculated)
6363.7 Da
IEP (calculated)
4.636
GRAVY (calculated)
0.239
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MGSVGFDPVP LGSSAFKQAS MLLSVFAGGD GYRVEENDGC LMLGWQTRPL IATSAWKLAG A
001: MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
Arabidopsis Description
RGL2RGL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VH73]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.