CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68278
CDX70328
CDX72645
CDX73193
CDX73496
CDX73827
CDX74755
CDX78219
CDX80854
CDX81458
CDX81944
CDX82180
CDX82720
CDX85912
CDX86738
CDX88455
CDX88579
CDX89862
CDX92291
CDX99294
CDX99366
CDY00765
CDY03344
CDY03443
CDY03654
CDY04090
CDY06819
CDY08440
CDY09436
CDY10404
CDY11241
CDY11912
CDY12943
CDY13289
CDY13363
CDY13540
CDY17665
CDY18188
CDY19545
CDY21648
CDY27368
CDY28440
CDY30303
CDY32514
CDY32870
CDY35886
CDY37054
CDY37218
CDY39057
CDY40192
CDY40279
CDY42141
CDY44032
CDY44046
CDY44344
CDY47499
CDY48724
CDY48816
CDY50264
CDY50441
CDY50559
CDY52391
CDY52614
CDY53886
CDY58016
CDY60689
CDY64971
CDY65245
CDY68406
CDY68825
CDY69077
CDY70365
CDY72283

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	CDX89862	AT1G03840.1	17785527
AT3G54220.1	CDY18188	AT1G03840.1	17785527
AT3G54220.1	CDY32514	AT1G03840.1	17785527
AT3G54220.1	CDY72283	AT1G03840.1	17785527
AT3G54220.1	CDY28440	AT1G27050.1	19228333
AT3G54220.1	CDY40279	AT1G27050.1	19228333
AT3G54220.1	CDY12943	AT1G62360.1	17785527
AT3G54220.1	CDY19545	AT1G62360.1	17785527
AT3G54220.1	CDX68278	AT1G72160.1	19228333
AT3G54220.1	CDX82180	AT1G72160.1	19228333
AT3G54220.1	CDY03654	AT1G72160.1	19228333
AT3G54220.1	CDY50441	AT1G72160.1	19228333
AT3G54220.1	CDX73193	AT1G75750.1	19228333
AT3G54220.1	CDX85912	AT1G75750.1	19228333
AT3G54220.1	CDY13540	AT1G75750.1	19228333
AT3G54220.1	CDY30303	AT1G75750.1	19228333
AT3G54220.1	CDY39057	AT1G75750.1	19228333
AT3G54220.1	CDY44046	AT1G75750.1	19228333
AT3G54220.1	CDY47499	AT1G75750.1	19228333
AT3G54220.1	CDY65245	AT1G75750.1	19228333
AT3G54220.1	CDY68406	AT1G75750.1	19228333
AT3G54220.1	CDX88455	AT1G78570.1	19228333
AT3G54220.1	CDY04090	AT2G01540.1	19228333
AT3G54220.1	CDY09436	AT2G01540.1	19228333
AT3G54220.1	CDY17665	AT2G01540.1	19228333
AT3G54220.1	CDY48816	AT2G01540.1	19228333
AT3G54220.1	CDY58016	AT2G01540.1	19228333
AT3G54220.1	CDY70365	AT2G01540.1	19228333
AT3G54220.1	CDX81944	AT2G19760.1	21798944
AT3G54220.1	CDX82720	AT2G19760.1	21798944
AT3G54220.1	CDY03344	AT2G19760.1	21798944
AT3G54220.1	CDY21648	AT2G19760.1	21798944
AT3G54220.1	CDY35886	AT2G19760.1	21798944
AT3G54220.1	CDY48724	AT2G19760.1	21798944
AT3G54220.1	CDX74755	AT2G45660.1	19228333
AT3G54220.1	CDY27368	AT2G45660.1	19228333
AT3G54220.1	CDY37054	AT2G45660.1	19228333
AT3G54220.1	CDY53886	AT2G45660.1	19228333
AT3G54220.1	CDY60689	AT2G45660.1	19228333
AT3G54220.1	CDY69077	AT2G45660.1	19228333
AT3G54220.1	CDX73827	AT3G12280.1	22921914
AT3G54220.1	CDY00765	AT3G12280.1	22921914
AT3G54220.1	CDY08440	AT3G12280.1	22921914
AT3G54220.1	CDY42141	AT3G12280.1	22921914
AT3G54220.1	CDY50559	AT3G12280.1	22921914
AT3G54220.1	CDY52391	AT3G12280.1	22921914
AT3G54220.1	CDY52614	AT3G12280.1	22921914
AT3G54220.1	CDX92291	AT3G18960.1	19228333
AT3G54220.1	CDX99294	AT3G18960.1	19228333
AT3G54220.1	CDX81458	AT3G32980.1	19228333
AT3G54220.1	CDY37218	AT3G32980.1	19228333
AT3G54220.1	CDX73496	AT3G54220.1	17785527
AT3G54220.1	CDX78219	AT3G54220.1	17785527
AT3G54220.1	CDX86738	AT4G11880.1	19228333
AT3G54220.1	CDY13289	AT4G11880.1	19228333
AT3G54220.1	CDY06819	AT4G29350.1	21798944
AT3G54220.1	CDY68825	AT4G29350.1	21798944
AT3G54220.1	CDX72645	AT4G37650.1	17446396
AT3G54220.1	CDY44032	AT4G37650.1	17446396
AT3G54220.1	CDY50264	AT4G37650.1	17446396
AT3G54220.1	CDX72645	AT4G37650.1	17785527
AT3G54220.1	CDY44032	AT4G37650.1	17785527
AT3G54220.1	CDY50264	AT4G37650.1	17785527
AT3G54220.1	CDX72645	AT4G37650.1	18500650
AT3G54220.1	CDY44032	AT4G37650.1	18500650
AT3G54220.1	CDY50264	AT4G37650.1	18500650
AT3G54220.1	CDX72645	AT4G37650.1	22921914
AT3G54220.1	CDY44032	AT4G37650.1	22921914
AT3G54220.1	CDY50264	AT4G37650.1	22921914
AT3G54220.1	CDX70328	AT5G03150.1	17785527
AT3G54220.1	CDX80854	AT5G03150.1	17785527
AT3G54220.1	CDY10404	AT5G03150.1	17785527
AT3G54220.1	CDY11241	AT5G03150.1	17785527
AT3G54220.1	CDY44344	AT5G03150.1	17785527
AT3G54220.1	CDX88579	AT5G56600.1	21798944
AT3G54220.1	CDX99366	AT5G56600.1	21798944
AT3G54220.1	CDY03443	AT5G56600.1	21798944
AT3G54220.1	CDY11912	AT5G56600.1	21798944
AT3G54220.1	CDY13363	AT5G56600.1	21798944
AT3G54220.1	CDY32870	AT5G56600.1	21798944
AT3G54220.1	CDY40192	AT5G56600.1	21798944
AT3G54220.1	CDY64971	AT5G56600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007056.1-P	Field mustard	mitochondrion, plastid	50.8	100.0
CDX78219	Canola	nucleus, plastid	95.82	98.84
AT3G54220.1	Thale cress	nucleus, plastid	88.75	84.53
KXG22896	Sorghum	cytosol, plasma membrane	55.95	66.03
GSMUA_Achr11P...	Banana	plastid	58.2	63.07
HORVU5Hr1G045920.2	Barley	cytosol	56.43	60.0
CDY64484	Canola	mitochondrion	23.47	59.35
TraesCS4A01G191300.1	Wheat	cytosol	57.4	57.86
TraesCS5B01G143100.1	Wheat	plastid	58.36	56.9
Os11t0124300-01	Rice	nucleus, plastid	59.16	56.53
Os12t0122000-01	Rice	plastid	59.81	56.36
GSMUA_Achr8P09400_001	Banana	cytosol	60.77	56.25
TraesCS5A01G144000.1	Wheat	plastid	58.2	55.86
TraesCS5D01G148000.1	Wheat	plastid	58.36	55.59
Zm00001d052380_P001	Maize	plastid	59.65	55.54
CDY27670	Canola	cytosol	34.89	53.71
TraesCS4B01G124000.1	Wheat	plastid	58.36	53.46
TraesCS4D01G122000.1	Wheat	plastid	58.36	53.46
Zm00001d005029_P001	Maize	plastid	57.88	53.1
VIT_08s0056g00050.t01	Wine grape	nucleus	66.72	53.07
OQU82754	Sorghum	plastid	60.13	52.6
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	58.04	51.06
Solyc10g074680.1.1	Tomato	cytosol	67.36	50.73
PGSC0003DMT400043358	Potato	cytosol	66.88	50.36
KRH40615	Soybean	nucleus, plastid	64.15	48.48
KRH00551	Soybean	nucleus, plastid	64.95	47.98
CDY50706	Canola	cytosol, extracellular, plastid	3.86	39.34
CDY43123	Canola	cytosol, extracellular, plastid	3.86	39.34
CDY45059	Canola	cytosol	16.24	33.22
CDY50028	Canola	nucleus, plastid	21.86	32.61
CDY54362	Canola	plastid	21.7	32.07
CDY68881	Canola	cytosol	12.22	31.15
CDY03601	Canola	cytosol	22.35	30.96
CDY22795	Canola	cytosol, plastid	21.86	30.63
CDY55037	Canola	cytosol	24.12	29.59
CDY70426	Canola	cytosol	23.79	29.19
CDY38434	Canola	cytosol	23.47	28.63
CDY16915	Canola	cytosol, nucleus, plastid	23.63	28.0
CDY36236	Canola	cytosol, nucleus, plastid	23.95	26.8
CDY17662	Canola	cytosol, nucleus, plastid	23.95	26.05
CDY04092	Canola	cytosol	21.54	25.09
CDY64837	Canola	cytosol	21.38	24.54
CDY53846	Canola	cytosol	21.7	23.16
CDY72338	Canola	cytosol	21.54	22.91
CDY49199	Canola	plastid	22.83	22.47
CDY47352	Canola	plastid	22.83	22.29
CDY70213	Canola	plastid	22.35	21.62
CDY45974	Canola	plastid	22.35	21.55
CDY43122	Canola	nucleus	13.99	20.86
CDY50707	Canola	cytosol, nucleus, plastid	13.83	20.67
CDY37137	Canola	plastid	21.38	13.94

Protein Annotations

EnsemblPlants:CDX73496	EnsemblPlantsGene:GSBRNA2T00109012001	GO:A0A078C8U7	InterPro:IPR005202	InterPro:TF_GRAS	ncoils:Coil
PANTHER:PTHR31636	PANTHER:PTHR31636:SF12	PFAM:PF03514	PFscan:PS50985	ProteinID:CDX73496	ProteinID:CDX73496.1
SEG:seg	UniParc:UPI0004EEC172	MapMan:15.5.12	MapMan:26.3.1.5	:	:

Description

BnaC08g25070D

Coordinates

chrLK031799:-:733982..736266

Molecular Weight (calculated)

68066.5 Da

IEP (calculated)

5.851

GRAVY (calculated)

-0.364

Length

622 amino acids

Sequence
(BLAST)

001: MAESSGKTTS SDNNSSSNRT VPPPPASAMV RKRLASEMSS SSSLNNNQRP PPPHRASHLP DSNYIVTAAA ADSTTHPTPP VSVCGFSGLP VFPSDNNNRT
101: AMSVQPMEQQ DSSSSSPTVW VDAIIRDLIN SSASVSIPQL IQNVRDIIFP CNPNLGALLE YRLRSLMLLD PPPSSSDPPP PPQPFEPLYH QQQQQQQQQP
201: KPPTPPPPPP VQQQERENSP PPPETVTTTT TTTTTTAEAL RERKEEIKRQ KQDEEGLHLL TLLLQCAEAV SADNLEEANK LLLEISQLST PYGTSAQRVA
301: AYFSEAMSAR LLNSCLGIYA ALPSRWMPQT HSLKMVSAFQ VFNGISPLVK FSHFTANQAI QEAFEKEDCV HIIDLDIMQG LQWPGLFHIL ASRPGGPPHV
401: RLTGLGTSME ALQATGKRLS DFADKLGLPF EFCPLAEKVG NLDAERLNVR KREAVAVHWL QHSLYDVTGS DTHTLWLLQR LAPKVVTVVE QDLSHAGSFL
501: GRFVEAIHYY SALFDSLGAS YGEESEERHV VEQQLLSKEI RNVLAVGGPS RSGEVKFESW REKMQQCGFK GISLAGNAAT QATLLLGMFP SDGYTLVDDN
601: GTLKLGWKDL SLLTASAWTP CS

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.