CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77460	nucleus
CDX83112	nucleus
CDX85167	nucleus
CDX92996	nucleus
CDX94841	nucleus
CDY02095	nucleus
CDY11608	nucleus
CDY16998	nucleus
CDY17797	nucleus
CDY18083	nucleus
CDY22172
CDY23022	nucleus
CDY27567
CDY29570	nucleus
CDY35481
CDY38800	nucleus
CDY40826
CDY49278	nucleus
CDY53612
CDY57741	nucleus
CDY58656
CDY59943	nucleus
CDY64587	nucleus
CDY67142	nucleus
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	CDY16998	AT1G47870.1	20407024
AT3G12280.1	CDY17797	AT1G47870.1	20407024
AT3G12280.1	CDY16998	AT1G47870.1	20706207
AT3G12280.1	CDY17797	AT1G47870.1	20706207
AT3G12280.1	CDY11608	AT1G70210.1	20407024
AT3G12280.1	CDY38800	AT1G70210.1	20407024
AT3G12280.1	CDY59943	AT1G70210.1	20407024
AT3G12280.1	CDY67142	AT1G70210.1	20407024
AT3G12280.1	CDY22172	AT3G08880.1	21798944
AT3G12280.1	CDY58656	AT3G08880.1	21798944
AT3G12280.1	CDY27567	AT3G20740.1	15221456
AT3G12280.1	CDY53612	AT3G20740.1	15221456
AT3G12280.1	CDY27567	AT3G20740.1	18812497
AT3G12280.1	CDY53612	AT3G20740.1	18812497
AT3G12280.1	CDX77460	AT3G24140.1	24571519
AT3G12280.1	CDX85167	AT3G24140.1	24571519
AT3G12280.1	CDX92996	AT3G24140.1	24571519
AT3G12280.1	CDX94841	AT3G24140.1	24571519
AT3G12280.1	CDY18083	AT3G24140.1	24571519
AT3G12280.1	CDY64587	AT3G24140.1	24571519
AT3G12280.1	CDX68573	AT3G50070.1	20407024
AT3G12280.1	CDX83112	AT3G50070.1	20407024
AT3G12280.1	CDY02095	AT3G50070.1	20407024
AT3G12280.1	CDY23022	AT3G50070.1	20407024
AT3G12280.1	CDY35481	AT3G55760.1	20706207
AT3G12280.1	CDY40826	AT3G55760.1	20706207
AT3G12280.1	CDX72453	AT4G34160.1	20407024
AT3G12280.1	CDX75405	AT4G34160.1	20407024
AT3G12280.1	CDX76265	AT4G34160.1	20407024
AT3G12280.1	CDY49278	AT4G34160.1	20407024
AT3G12280.1	CDY57741	AT4G34160.1	20407024
AT3G12280.1	CDY69708	AT4G34160.1	20407024
AT3G12280.1	CDX72643	AT4G37630.1	20407024
AT3G12280.1	CDY29570	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001446.1-P	Field mustard	nucleus	97.82	96.3
CDY00765	Canola	mitochondrion	95.25	86.29
CDY08440	Canola	nucleus	85.46	85.04
CDY42141	Canola	cytosol	84.77	84.27
CDY50559	Canola	nucleus	83.78	83.45
CDY52614	Canola	cytosol	82.89	83.13
AT3G12280.1	Thale cress	nucleus	83.28	83.12
KRH13310	Soybean	nucleus	67.16	67.56
CDY52391	Canola	nucleus	15.33	67.1
KRH20664	Soybean	nucleus	66.96	66.77
VIT_04s0008g02780.t01	Wine grape	nucleus	65.97	66.3
KRH63701	Soybean	nucleus	66.47	66.27
PGSC0003DMT400030280	Potato	nucleus	64.79	64.47
Solyc09g091280.2.1	Tomato	cytosol	64.39	63.95
GSMUA_Achr8P00470_001	Banana	nucleus	58.56	58.91
Os08t0538700-01	Rice	nucleus	58.16	58.22
EES14166	Sorghum	nucleus	57.96	57.91
Zm00001d052695_P016	Maize	nucleus	57.17	57.4
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	57.27	56.6
TraesCS7A01G264800.1	Wheat	nucleus	54.8	54.26
TraesCS7B01G162700.4	Wheat	nucleus, plastid	54.6	54.06
TraesCS7D01G265600.3	Wheat	nucleus	54.8	53.84
GSMUA_Achr6P08220_001	Banana	nucleus	52.82	53.35
HORVU7Hr1G055440.9	Barley	plastid	54.5	51.79
Os11t0533500-01	Rice	nucleus	47.08	48.67
TraesCS4A01G143200.1	Wheat	plastid	47.08	48.52
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	46.49	47.91
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	41.35	47.88
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	46.39	47.86
TraesCS4B01G162200.1	Wheat	nucleus	46.39	47.81
OQU83580	Sorghum	plastid	40.85	47.58
KXG21076	Sorghum	plastid	41.05	47.37
Zm00001d052666_P014	Maize	nucleus	40.95	44.9
KXG26019	Sorghum	cytosol	10.88	40.89

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	GO:A0A078CAD1	EnsemblPlants:CDX73827	ProteinID:CDX73827
ProteinID:CDX73827.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00111526001	PFAM:PF01857
PFAM:PF01858	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A
InterPro:RB_B	InterPro:RB_N	InterPro:RB_fam	SMART:SM00385	SMART:SM01367	SMART:SM01368
SUPFAM:SSF47954	UniParc:UPI0004EE3CBE	SEG:seg	:	:	:

Description

BnaA03g32200D

Coordinates

chrLK031800:+:97077..101953

Molecular Weight (calculated)

112363.0 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.168

Length

1011 amino acids

Sequence
(BLAST)

0001: MEEVQLPVTP TIDSNGDRSE ETFLDLCEKV LFLEGSVCDE AVKLFTETKL ILSASMSNIG SGTAEEVERF WFASVLYSVK MLSVRKQVDG KSVVAGGNGF
0101: NLCQILRALK LNIVDFFREL PQFIVKAGPV LCEIYGADWE SRLQAKELQA NVAHLSLLSS YYKRGYREFF LTYDANAEKT SANSSSYLPS SYRFGWLLFL
0201: ALRNHAFSRF KDLVTCTNGL VSILAILIIH VPCRFRNFNI QGSSRFVKKD DKDVDLIASL CKIYDASEDE LRATMDKTNN LIETILKKKP SACQTDKLDN
0301: IDTDGLTYFE DLLDETSIST SLITLEKDYT DAVCNRSELD ERVFINEEDS LLGSGSLSAG AVNITGVKRK INCLSSPART VICALSPHKS PAAKTNSIGG
0401: ANRLTATPVS TAMTTAKWLR TVICTLPPKP SPVLERFLKS CDRDITSDVT RRAHVILEAI FPNSFLGDRC TGGSLQPVNL MDDIWAKERR LEAIKLYYRV
0501: LETLCRAEAQ ILHATNLNSL LTNERFHRCM LACSAELVLA THKSITMLFP AVLERTGITA FDLCKVIESF IRYEDSLPRE LRRHLNSLEE RLLESMVWEK
0601: GSSMYNSLII AKPSLAQEIN QLRLLAEPMP SLDAIAALIN FSEGLNHASS VQKHETCPGQ NGDIKSPKRQ CTDYHSVLVE RNSFTSPVKD RLLASGIVKS
0701: KLPPPPLQSA FASPTRPSPA GGGETCAETG INIFFTKINK LAAVRINGMV ERLQLSQQIR ESVYRLFQLV LTQQTSLLFN RHIDQIILCC FYGVAKLSQM
0801: RLTFKEIVFN YRKQPQCKPL VFGSVYVDSF HCRRQGRVGP DYVNIITFYN DVFVPAAKTL LVEIVPAKND QDVEANNKPE GHCPGSSKAS VFPSVPDMSP
0901: KKVSAVHNVY VSPLRASKID ALISHSSRSS YACVGESTRA YQSPSKDLSA INNRLNNSSN RNRKRTLNFD VELVSDSMVA NSLPLQNQQN QNGSDASPSG
1001: GAPLKTEPLH S

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.