Factsheet for Zm00001d052666_P014

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003439_P001	nucleus
Zm00001d004512_P001	nucleus
Zm00001d005293_P001	nucleus, nucleus
Zm00001d009715_P001	nucleus
Zm00001d013728_P001	nucleus
Zm00001d019696_P001	nucleus, nucleus
Zm00001d020353_P001	nucleus
Zm00001d024698_P002
Zm00001d028092_P001	nucleus
Zm00001d030894_P002	nucleus
Zm00001d033330_P001	nucleus
Zm00001d041345_P001	nucleus
Zm00001d048143_P003	nucleus
Zm00001d049608_P001
Zm00001d052977_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20407024
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20706207
AT3G12280.1	Zm00001d020353_P001	AT1G70210.1	20407024
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	15221456
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	15221456
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	18812497
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	18812497
AT3G12280.1	Zm00001d009715_P001	AT3G24140.1	24571519
AT3G12280.1	Zm00001d005293_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d052977_P001	AT3G55760.1	20706207
AT3G12280.1	Zm00001d005293_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d003439_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d013728_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d028092_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d030894_P002	AT4G37630.1	20407024
AT3G12280.1	Zm00001d033330_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d041345_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d048143_P003	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	85.03	89.81
Os11t0533500-01	Rice	nucleus	71.69	67.59
TraesCS4A01G143200.1	Wheat	plastid	70.82	66.56
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	70.5	66.26
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	70.07	65.92
TraesCS4B01G162200.1	Wheat	nucleus	69.52	65.34
VIT_14s0068g00840.t01	Wine grape	cytosol	29.83	46.77
GSMUA_Achr6P08220_001	Banana	nucleus	49.02	45.15
Zm00001d052695_P016	Maize	nucleus	47.51	43.5
VIT_04s0008g02780.t01	Wine grape	nucleus	47.29	43.34
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	47.94	43.21
KRH13310	Soybean	nucleus	46.75	42.89
KRH20664	Soybean	nucleus	46.96	42.7
KRH63701	Soybean	nucleus	46.53	42.31
AT3G12280.1	Thale cress	nucleus	45.88	41.76
Solyc09g091280.2.1	Tomato	cytosol	45.99	41.65
PGSC0003DMT400030280	Potato	nucleus	45.77	41.54
CDY08440	Canola	nucleus	45.77	41.54
Bra034764.1-P	Field mustard	nucleus	45.77	41.54
Bra038707.1-P	Field mustard	nucleus	45.66	41.31
CDY42141	Canola	cytosol	45.55	41.3
CDY50559	Canola	nucleus	45.44	41.28
CDY52614	Canola	cytosol	45.01	41.17
CDX73827	Canola	nucleus	44.9	40.95
Bra001446.1-P	Field mustard	nucleus	44.79	40.21
CDY00765	Canola	mitochondrion	44.69	36.92
CDY52391	Canola	nucleus	6.83	27.27

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	EntrezGene:541652	UniProt:A0A1D6QIF0	ProteinID:AQK57625.1	ProteinID:AQK57631.1
ProteinID:AQK57657.1	ProteinID:AQK57658.1	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	PFAM:PF01857	PFAM:PF01858
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B
InterPro:RB_N	InterPro:RB_fam	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI000845588E
EnsemblPlantsGene:Zm00001d052666	EnsemblPlants:Zm00001d052666_P014	EnsemblPlants:Zm00001d052666_T014	SEG:seg	:	:

Description

related to retinoblastoma2Retinoblastoma-related protein 2

Coordinates

chr4:+:196473423..196480593

Molecular Weight (calculated)

102641.0 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.212

Length

922 amino acids

Sequence
(BLAST)

001: MSSQDPPPAT STQKGGTDLV LFLHWYLDLR IQQKQSESLV NLLAEASRFY RKAYNELFSG LITEWEPESS TNTPDYMLFG WHLFLTLRSR SPELFKDLVS
101: CIHGLVAVLA ILLVHVPAKF RTFTIEGSSH LIKQTEKGVD LIASLCHNYH TSEECLKEMM DKSHKAIEEV FSMKALSASE CKTENLDKID TGMEPFLAYR
201: LMYFKGLIDM ECFQSNLEKM EKLCNSNNCE AELDFKLILT NNDYIPCAEN LSRDSTNLGC SKCAFETLAS PTKTIKNMLT VPSSPLSPTN GGSVKIVQMT
301: PITSAMTTAK WLREVISSLP EKPSSKLQQL MSSCDRDLTN AVTERVSIVL EAIFPTKSSA DRGGSLGLNC ANAFDTLWAD ARKMEASKLY YRVLEAICRA
401: ELQNSNVNNL TPLLSNERFH RCLIACSAEL VLATHKTVIM MFPAVLESTG LTSFDLSKII ENFVRHEETL PRELKRHLNS LEEQILESMA WEKGSSLYNS
501: LIVARPSVAS EINRFGLLAE SMPSLDDLVA RQNIHIEGLP ATPSKKRAAG RDDNADPRSP KRPCNESRST VVEHNLQTPP PKQCHMVLTS LKAKCHPLQS
601: TFASPTVSNP VGGNEKCADV TIQIFFSKIL KLAAIRIRNL CERIQYMEQT ERVYNVFKQI LDQQTTLFFN RHIDQLILCC LYGVAKVCQL ELSFREILNN
701: YKKEAQCKPE VFLSIYIGSR NHNGVLISRH VDIITFYNEV FVPAAKPFLV SLISSGTRPE DKKNASGQVP GSPKLSPFPN LPDMSPKKVS ASHNVYVSPL
801: RQTKINMAYA CLNSTAQYVS TTASMTKLLS PKLGMDLLLS PSSRSFYACI GEGTHAYQSP SKDLAAINSR LNYNGRRVNS RLNFDMVSDS VVAGSLGQPN
901: GGSTSLDPAA AFSPLSKRKP DT

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.