Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g107730.2.1 | nucleus |
| Solyc02g064860.1.1 | nucleus |
| Solyc02g064900.1.1 | nucleus |
| Solyc02g064910.1.1 | nucleus |
| Solyc02g092980.2.1 | nucleus |
| Solyc04g081350.2.1 | nucleus |
| Solyc05g006050.2.1 | nucleus |
| Solyc05g053660.1.1 | nucleus |
| Solyc06g053920.2.1 | |
| Solyc07g064090.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030280 | Potato | nucleus | 97.35 | 97.54 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 72.1 | 72.96 |
| KRH13310 | Soybean | nucleus | 70.43 | 71.34 |
| KRH20664 | Soybean | nucleus | 70.24 | 70.51 |
| KRH63701 | Soybean | nucleus | 69.84 | 70.12 |
| AT3G12280.1 | Thale cress | nucleus | 66.99 | 67.32 |
| CDY52614 | Canola | cytosol | 66.21 | 66.87 |
| CDY08440 | Canola | nucleus | 66.7 | 66.83 |
| CDY42141 | Canola | cytosol | 66.7 | 66.77 |
| Bra034764.1-P | Field mustard | nucleus | 66.6 | 66.73 |
| CDY50559 | Canola | nucleus | 66.31 | 66.5 |
| Bra038707.1-P | Field mustard | nucleus | 66.11 | 66.05 |
| CDX73827 | Canola | nucleus | 63.95 | 64.39 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 63.46 | 64.28 |
| Bra001446.1-P | Field mustard | nucleus | 63.65 | 63.1 |
| Os08t0538700-01 | Rice | nucleus | 61.3 | 61.78 |
| EES14166 | Sorghum | nucleus | 60.31 | 60.67 |
| Zm00001d052695_P016 | Maize | nucleus | 59.04 | 59.68 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 59.33 | 59.04 |
| CDY00765 | Canola | mitochondrion | 64.64 | 58.96 |
| TraesCS7B01G162700.4 | Wheat | nucleus, plastid | 59.04 | 58.86 |
| TraesCS7A01G264800.1 | Wheat | nucleus | 58.94 | 58.77 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 58.94 | 58.31 |
| HORVU7Hr1G055440.9 | Barley | plastid | 58.35 | 55.83 |
| GSMUA_Achr6P08220_001 | Banana | nucleus | 53.44 | 54.35 |
| Os11t0533500-01 | Rice | nucleus | 48.04 | 50.0 |
| TraesCS4A01G143200.1 | Wheat | plastid | 47.84 | 49.64 |
| TraesCS4D01G159600.1 | Wheat | cytosol, nucleus, plastid | 47.74 | 49.54 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 47.45 | 49.24 |
| HORVU4Hr1G039890.2 | Barley | cytosol, nucleus, plastid | 47.05 | 48.88 |
| Zm00001d007407_P006 | Maize | cytosol, nucleus, plastid | 41.85 | 48.8 |
| OQU83580 | Sorghum | plastid | 40.96 | 48.04 |
| KXG21076 | Sorghum | plastid | 40.96 | 47.6 |
| CDY52391 | Canola | nucleus | 10.51 | 46.32 |
| Zm00001d052666_P014 | Maize | nucleus | 41.65 | 45.99 |
| KXG26019 | Sorghum | cytosol | 10.51 | 39.78 |
Protein Annotations
Description
Retinoblastoma-related protein 1 [Source:Projected from Arabidopsis thaliana (AT3G12280) UniProtKB/Swiss-Prot;Acc:Q9LKZ3]
Coordinates
chr9:+:70572017..70578568
Molecular Weight (calculated)
113617.0 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.218
Length
1018 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNMEELKNHS NSEENGSVDS LEVRFSDFCK NGLSMGESFM VEARKLFMDS KHLLLSNNAA IGAITPEEVE RYWFVFVLFS VKRLSENEAR NSSNGNEGNG
0101: FDLCQILRGA KLNVLDFFKE LPQFIVKVGP VLSNLYGSDW EKRLQAKELQ TNFVHLSLLS KYYKRAYQEL FLSSDNNEVN QSATSNSIVL LPQYYRFGWL
0201: LFLSLREHVF SRFKDLVTCT NGLVSVLAIL IIHVPVCFRN FNINDSPRFV KKGDKVDLLV SLSSIYQTSI DDLRETMDKV NNLITVKLKK ELCLASECRA
0301: KNLDNIDADG LTYFENLLEE SSLSSSICIL EKDYNDAIQN KGELDERIFV NDEDSLLGSG SLSGGAVNMN GIKKKFDAMA SPTKTITSPL SPYRSPGASN
0401: VNSNLNCGNS KMAATPVTTA MTTARWLRTV IAPLQAKPSP ELERFLSACD RNVSADVIRR AHIILEAIFP SSGPGEHCAA GSLQSTSLMD NIWAEQRRSE
0501: SLKLYYRVLQ TMCVAESQIL HVTNLTSLLT NERFHRCMLA CSAELVLATH KTVTMLFPAV LERTGITSFD LSKVIESFIR HEESLPRELR RHLNSLEERL
0601: LESMVWEKGS SMYNSLTVAK PSLSAEINRL GLLAEPMPSL DAIAMHINPS LGNLPPVPPL QKSDLAPNGH ICDIRSPKRL CTEYRSVLVE RNSFTSPVKD
0701: RFLALTNIKS KFPPPLQSAF ASPTRPNPGG GGETCAETSI NVFFGKIVKL AAVRINGMIE RLQLSQQIRE TVYCLFQKIL SQRTSLFFSR HIDQIILCSF
0801: YGVAKISQLN LTFKEIIYNY RKQPQCKPQV FRSVFVDWTS ARHNGKTGSE HVDIITFYNE MFIPSVKPLL VELAPAGNEQ KNNHVEKTKK DGQGPASPRS
0901: SSFPSLPDMS PKKVSAVHNV YVSPLRSSKM DALISHSSKS YYACVGESTH AYQSPSKDLT VINNRLNGNR KLRGALNFDD VDAVGLVSDS IVANTLYLQN
1001: GNCISSPRAA VKTEQPEP
0101: FDLCQILRGA KLNVLDFFKE LPQFIVKVGP VLSNLYGSDW EKRLQAKELQ TNFVHLSLLS KYYKRAYQEL FLSSDNNEVN QSATSNSIVL LPQYYRFGWL
0201: LFLSLREHVF SRFKDLVTCT NGLVSVLAIL IIHVPVCFRN FNINDSPRFV KKGDKVDLLV SLSSIYQTSI DDLRETMDKV NNLITVKLKK ELCLASECRA
0301: KNLDNIDADG LTYFENLLEE SSLSSSICIL EKDYNDAIQN KGELDERIFV NDEDSLLGSG SLSGGAVNMN GIKKKFDAMA SPTKTITSPL SPYRSPGASN
0401: VNSNLNCGNS KMAATPVTTA MTTARWLRTV IAPLQAKPSP ELERFLSACD RNVSADVIRR AHIILEAIFP SSGPGEHCAA GSLQSTSLMD NIWAEQRRSE
0501: SLKLYYRVLQ TMCVAESQIL HVTNLTSLLT NERFHRCMLA CSAELVLATH KTVTMLFPAV LERTGITSFD LSKVIESFIR HEESLPRELR RHLNSLEERL
0601: LESMVWEKGS SMYNSLTVAK PSLSAEINRL GLLAEPMPSL DAIAMHINPS LGNLPPVPPL QKSDLAPNGH ICDIRSPKRL CTEYRSVLVE RNSFTSPVKD
0701: RFLALTNIKS KFPPPLQSAF ASPTRPNPGG GGETCAETSI NVFFGKIVKL AAVRINGMIE RLQLSQQIRE TVYCLFQKIL SQRTSLFFSR HIDQIILCSF
0801: YGVAKISQLN LTFKEIIYNY RKQPQCKPQV FRSVFVDWTS ARHNGKTGSE HVDIITFYNE MFIPSVKPLL VELAPAGNEQ KNNHVEKTKK DGQGPASPRS
0901: SSFPSLPDMS PKKVSAVHNV YVSPLRSSKM DALISHSSKS YYACVGESTH AYQSPSKDLT VINNRLNGNR KLRGALNFDD VDAVGLVSDS IVANTLYLQN
1001: GNCISSPRAA VKTEQPEP
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.