Factsheet for Solyc01g107730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1
Solyc02g090680.2.1
Solyc04g082840.2.1
Solyc07g064510.2.1
Solyc08g066330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	Solyc04g082840.2.1	AT1G76540.1	12857813
AT4G34160.1	Solyc01g108610.2.1	AT3G19150.1	17426018
AT4G34160.1	Solyc02g090680.2.1	AT3G19150.1	17426018
AT4G34160.1	Solyc01g108610.2.1	AT3G19150.1	20706207
AT4G34160.1	Solyc02g090680.2.1	AT3G19150.1	20706207
AT4G34160.1	Solyc08g066330.1.1	AT3G48750.1	11096103
AT4G34160.1	Solyc08g066330.1.1	AT3G48750.1	16517759
AT4G34160.1	Solyc08g066330.1.1	AT3G48750.1	16766674
AT4G34160.1	Solyc08g066330.1.1	AT3G48750.1	17426018
AT4G34160.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT4G34160.1	Solyc07g064510.2.1	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066557	Potato	nucleus	94.23	95.81
VIT_07s0129g01100.t01	Wine grape	nucleus	53.57	63.11
VIT_03s0180g00040.t01	Wine grape	nucleus	65.11	61.4
KRG90996	Soybean	nucleus	61.26	56.74
KRH35760	Soybean	nucleus	60.44	54.73
CDX72453	Canola	nucleus	51.65	52.22
Solyc12g088650.1.1	Tomato	nucleus	46.15	51.69
CDX76265	Canola	nucleus	51.65	51.51
Bra011501.1-P	Field mustard	nucleus	52.75	51.47
Bra017629.1-P	Field mustard	nucleus	51.92	51.36
CDY49278	Canola	nucleus	51.92	51.22
CDY57741	Canola	nucleus	51.1	50.96
CDX75405	Canola	nucleus	52.2	50.94
CDY69708	Canola	nucleus	51.92	50.53
Bra034612.1-P	Field mustard	nucleus	50.82	50.27
Solyc02g092980.2.1	Tomato	nucleus	49.45	50.14
Solyc04g078470.2.1	Tomato	nucleus	46.15	50.0
AT4G34160.1	Thale cress	nucleus	51.65	50.0
Solyc02g064900.1.1	Tomato	nucleus	42.86	45.09
Solyc02g064910.1.1	Tomato	nucleus	25.82	40.0
Solyc02g064860.1.1	Tomato	nucleus	25.27	39.15
GSMUA_Achr1P09780_001	Banana	cytosol	36.26	34.02
GSMUA_Achr2P05260_001	Banana	nucleus	31.87	33.62
GSMUA_Achr4P20220_001	Banana	nucleus	33.24	33.43
GSMUA_Achr3P13140_001	Banana	nucleus	36.54	32.68
GSMUA_AchrUn_...	Banana	cytosol	28.3	32.49
Solyc04g076040.2.1	Tomato	nucleus	31.04	31.83
HORVU5Hr1G050270.8	Barley	cytosol	30.49	31.62
Solyc11g010460.1.1	Tomato	cytosol	26.92	31.41
GSMUA_Achr3P01010_001	Banana	nucleus	34.89	31.2
TraesCS5B01G158400.1	Wheat	cytosol	30.22	31.07
TraesCS5A01G161000.1	Wheat	cytosol	30.22	31.07
TraesCS5D01G165900.1	Wheat	cytosol	30.22	31.07
Os09t0111100-01	Rice	cytosol	30.77	30.77
Solyc05g006050.2.1	Tomato	nucleus	27.75	29.97
Solyc05g051410.2.1	Tomato	nucleus	27.75	29.36
Solyc12g087900.1.1	Tomato	nucleus	25.27	29.11
Zm00001d019696_P001	Maize	cytosol	29.12	27.39
EER96424	Sorghum	cytosol	28.57	27.23
Zm00001d005293_P001	Maize	cytosol	29.12	27.11
Solyc02g079370.2.1	Tomato	nucleus	21.7	26.6
Solyc07g054950.1.1	Tomato	nucleus	21.43	25.16
Solyc03g006670.2.1	Tomato	nucleus	21.15	24.76

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EMBL:AJ002589	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0000003	GO:GO:0000082	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735
GO:GO:0009744	GO:GO:0009791	GO:GO:0009987	GO:GO:0010444	GO:GO:0030154	GO:GO:0048316
PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	UniProt:Q9SMD5
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc01g107730.2	EnsemblPlants:Solyc01g107730.2.1	UniParc:UPI00000A5D98
SEG:seg	:	:	:	:	:

Description

CycD3;2 protein [Source:UniProtKB/TrEMBL;Acc:Q9SMD5]

Coordinates

chr1:-:95178906..95180787

Molecular Weight (calculated)

41793.3 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.067

Length

364 amino acids

Sequence
(BLAST)

001: MAIENNDQSF FLDVLYCEEE EEKWGDLLED EEGVIINPLL LSSEGTTKTN SLLLLPLLLL EQDLFWEDEE LLSLFVKEKE TRCCFESFGS DPFLCSARVD
101: VVEWILKVNA HYDFSALTAI LAINYLDRFL SSLQFQKDKP WMTQLAAVTC LSLAAKVEET QVPLLLDFQV EDAKYVFEAK TIQRMELLVL SSLKWRMNPV
201: TPLSFLDHII RRLGLKNNVH WEFLRRCESL LLSVMIDCRF VRYMPSVLAT AIMLHVIHQI EPCNAIDYQN QLLGVLKISK ENVNNCYELI SEVSSKPITS
301: HKRKYDENPS SPSGVIDPIY TSESSNDSWD LDLPSFKKSK VQEQQMKMSS SLSRVFVEAV GSPH

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.