Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017629.1-P | Field mustard | nucleus | 97.83 | 98.1 |
| CDX72453 | Canola | nucleus | 92.14 | 94.44 |
| CDY57741 | Canola | nucleus | 84.82 | 85.75 |
| CDX76265 | Canola | nucleus | 84.28 | 85.21 |
| CDY69708 | Canola | nucleus | 84.28 | 83.16 |
| CDX75405 | Canola | nucleus | 83.74 | 82.84 |
| AT4G34160.1 | Thale cress | nucleus | 84.01 | 82.45 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 46.07 | 55.02 |
| PGSC0003DMT400066557 | Potato | nucleus | 50.95 | 52.51 |
| Solyc01g107730.2.1 | Tomato | nucleus | 51.22 | 51.92 |
| KRG90996 | Soybean | nucleus | 55.01 | 51.65 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 53.93 | 51.55 |
| KRH35760 | Soybean | nucleus | 54.74 | 50.25 |
| CDY02095 | Canola | nucleus | 40.65 | 45.73 |
| CDY01425 | Canola | nucleus | 43.36 | 45.2 |
| CDX83112 | Canola | nucleus | 42.82 | 44.89 |
| CDX68573 | Canola | nucleus | 42.82 | 44.89 |
| CDY23022 | Canola | nucleus | 39.84 | 44.68 |
| CDY30607 | Canola | nucleus | 42.55 | 44.48 |
| CDY12825 | Canola | nucleus | 43.09 | 44.41 |
| CDY17742 | Canola | nucleus | 42.01 | 43.66 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 19.78 | 42.44 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 31.98 | 34.2 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 35.77 | 34.02 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 36.31 | 32.92 |
| CDY11608 | Canola | nucleus | 28.18 | 32.81 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 31.71 | 32.32 |
| CDY38800 | Canola | nucleus | 27.91 | 32.29 |
| CDY13755 | Canola | nucleus | 25.2 | 31.85 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.08 | 31.62 |
| CDY67142 | Canola | nucleus | 28.73 | 31.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.83 | 31.23 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 29.81 | 31.07 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 29.81 | 31.07 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 29.81 | 31.07 |
| CDX81286 | Canola | nucleus | 21.68 | 30.08 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 33.06 | 29.98 |
| CDY59943 | Canola | nucleus | 29.27 | 29.92 |
| CDY54717 | Canola | nucleus | 21.41 | 29.7 |
| Os09t0111100-01 | Rice | cytosol | 28.73 | 29.12 |
| CDY08795 | Canola | nucleus | 23.58 | 28.25 |
| CDX89480 | Canola | nucleus | 27.1 | 28.17 |
| CDX76917 | Canola | nucleus | 26.83 | 27.97 |
| CDY25602 | Canola | nucleus | 26.83 | 27.81 |
| CDY14561 | Canola | cytosol | 24.39 | 27.69 |
| CDY37828 | Canola | nucleus | 23.04 | 27.51 |
| EER96424 | Sorghum | cytosol | 28.18 | 27.23 |
| CDY33959 | Canola | nucleus | 22.49 | 27.21 |
| Zm00001d019696_P001 | Maize | cytosol | 28.46 | 27.13 |
| Zm00001d005293_P001 | Maize | cytosol | 28.18 | 26.6 |
| CDY29570 | Canola | nucleus | 23.58 | 26.05 |
| CDX97009 | Canola | nucleus | 20.05 | 25.26 |
| CDX72643 | Canola | nucleus | 23.04 | 25.0 |
| CDX69832 | Canola | nucleus | 20.05 | 24.92 |
| CDY22116 | Canola | nucleus | 18.16 | 22.48 |
| CDY21951 | Canola | nucleus | 17.89 | 21.85 |
| CDY55121 | Canola | cytosol | 18.97 | 20.41 |
| CDX90892 | Canola | nucleus | 8.4 | 20.39 |
| CDY40332 | Canola | cytosol | 18.7 | 20.29 |
| CDY10467 | Canola | cytosol | 18.43 | 20.06 |
| CDX80803 | Canola | cytosol | 18.7 | 15.3 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078IJM8 | UniProt:A0A078IJM8 | EnsemblPlants:CDY49278 | ProteinID:CDY49278 |
| ProteinID:CDY49278.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00092693001 | PFAM:PF00134 | PFAM:PF02984 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF351 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE0D74 | SEG:seg | : | : | : | : |
Description
BnaA03g50910DBnaA03g50910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJM8]
Coordinates
chrLK032822:+:56033..57897
Molecular Weight (calculated)
42263.2 Da
IEP (calculated)
4.678
GRAVY (calculated)
-0.308
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRKEDESR EEQSTSFLLD ALYCEEEKWE DEEEAQEVEE NSSFSSSSPT SPLVLLQQDL YWEDEDLVTL FSKEEEQRLS RLDDVYLATD RKEAVGWILR
101: VNARYGFSTL TAVLAITYLD KFICSYSLQR DKPWMLQLVS VACLSLAAKV EEVHVPLLLD FQVNVETKYV FEAKTIQRME LLLLSTLQWK MHLVTPLSFL
201: DHIIRRLGLK NNSHWDFLNR CHRLILSVIS DSRFVGYLPS VVAAATMMRI IDQVETFDPL SHQTNLLGVL NITKEKVEAC YNLILQLPLD HMGLQIETQS
301: CRKRKSRDSS SSLSSPSCVI DSNPFNSDES SNDSWSASSC NPPSSSPQQE QQEPPLKKTK MEKPIVHLS
101: VNARYGFSTL TAVLAITYLD KFICSYSLQR DKPWMLQLVS VACLSLAAKV EEVHVPLLLD FQVNVETKYV FEAKTIQRME LLLLSTLQWK MHLVTPLSFL
201: DHIIRRLGLK NNSHWDFLNR CHRLILSVIS DSRFVGYLPS VVAAATMMRI IDQVETFDPL SHQTNLLGVL NITKEKVEAC YNLILQLPLD HMGLQIETQS
301: CRKRKSRDSS SSLSSPSCVI DSNPFNSDES SNDSWSASSC NPPSSSPQQE QQEPPLKKTK MEKPIVHLS
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.