Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17286 | Canola | nucleus | 93.32 | 96.54 |
| AT5G54900.1 | Thale cress | nucleus | 70.41 | 76.23 |
| CDX89287 | Canola | nucleus | 70.64 | 71.5 |
| CDY46671 | Canola | nucleus | 72.55 | 70.86 |
| CDY29263 | Canola | nucleus | 70.64 | 70.64 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 71.6 | 70.42 |
| CDY14290 | Canola | nucleus | 68.26 | 68.59 |
| CDY66423 | Canola | nucleus | 68.5 | 67.37 |
| PGSC0003DMT400057203 | Potato | cytosol | 57.28 | 59.55 |
| Solyc07g064510.2.1 | Tomato | plastid | 57.76 | 59.02 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 60.14 | 54.43 |
| CDY34835 | Canola | nucleus | 49.64 | 52.93 |
| CDY06734 | Canola | mitochondrion | 33.65 | 46.23 |
| CDY32840 | Canola | nucleus | 44.39 | 44.18 |
| CDX82310 | Canola | nucleus | 43.44 | 44.17 |
| CDY16528 | Canola | nucleus | 44.39 | 43.87 |
| CDY22988 | Canola | nucleus | 43.68 | 43.57 |
| CDY50959 | Canola | nucleus | 44.63 | 43.49 |
| CDY29341 | Canola | nucleus | 43.44 | 43.44 |
| CDY68866 | Canola | nucleus | 42.96 | 43.37 |
| CDY28101 | Canola | nucleus | 44.39 | 43.36 |
| CDX95176 | Canola | nucleus | 42.48 | 42.48 |
| CDY52067 | Canola | nucleus | 42.48 | 42.48 |
| CDY13992 | Canola | nucleus | 42.24 | 42.24 |
| CDX99265 | Canola | nucleus | 42.72 | 42.22 |
| CDY18570 | Canola | nucleus | 43.68 | 42.17 |
| CDX92537 | Canola | nucleus | 42.0 | 42.0 |
| CDX92304 | Canola | nucleus | 42.48 | 41.98 |
| CDX95462 | Canola | nucleus | 43.44 | 41.94 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 42.48 | 41.4 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 42.48 | 41.4 |
| Zm00001d021149_P001 | Maize | cytosol | 16.23 | 41.21 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 49.4 | 40.83 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.97 | 27.03 |
| CDY61476 | Canola | nucleus | 26.01 | 26.01 |
| CDY02486 | Canola | nucleus | 26.01 | 25.95 |
| CDY51403 | Canola | nucleus | 25.54 | 25.48 |
| CDY33092 | Canola | nucleus | 25.54 | 25.18 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.73 | 20.55 |
| CDY67365 | Canola | plastid | 13.84 | 19.86 |
| CDX69025 | Canola | nucleus, plastid | 24.11 | 16.53 |
| CDX75397 | Canola | nucleus, plastid | 23.87 | 16.23 |
| CDY72408 | Canola | plastid | 3.58 | 16.13 |
| CDY59539 | Canola | nucleus | 14.08 | 16.12 |
| CDY62723 | Canola | cytosol | 23.63 | 16.05 |
| CDY51957 | Canola | cytosol, plastid | 23.63 | 15.99 |
| CDY66740 | Canola | nucleus | 14.08 | 15.49 |
| CDY67617 | Canola | nucleus | 14.08 | 15.49 |
| CDY43894 | Canola | nucleus | 13.37 | 15.38 |
| CDY38939 | Canola | nucleus | 23.63 | 15.37 |
| CDX89562 | Canola | nucleus | 23.63 | 15.35 |
| CDX89664 | Canola | cytosol | 22.43 | 15.31 |
| CDX79296 | Canola | plastid | 6.68 | 15.3 |
| CDX71223 | Canola | cytosol | 23.15 | 15.2 |
| CDY46079 | Canola | nucleus | 22.2 | 14.79 |
| CDY51045 | Canola | cytosol | 22.91 | 14.7 |
| CDY54068 | Canola | cytosol | 22.91 | 14.7 |
| CDY36634 | Canola | nucleus | 22.2 | 14.33 |
| CDY37935 | Canola | nucleus | 21.96 | 14.13 |
| CDY56198 | Canola | cytosol | 16.47 | 14.11 |
| CDY67921 | Canola | nucleus | 21.72 | 14.11 |
| CDY41472 | Canola | cytosol, plastid | 21.24 | 13.88 |
| CDY03685 | Canola | nucleus | 21.0 | 13.69 |
| CDY57754 | Canola | nucleus | 6.92 | 13.62 |
| CDX96344 | Canola | plastid | 22.2 | 13.6 |
| CDX72826 | Canola | plastid | 21.96 | 13.45 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.76 | 13.43 |
| CDY36684 | Canola | plastid | 21.24 | 13.38 |
| CDY30168 | Canola | cytosol | 16.95 | 13.2 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.21 | 13.0 |
| CDY67364 | Canola | nucleus | 6.68 | 9.56 |
| CDY37229 | Canola | cytosol | 4.3 | 8.45 |
| CDX91689 | Canola | nucleus | 4.53 | 6.23 |
| CDX92325 | Canola | nucleus | 4.53 | 5.9 |
| CDY08990 | Canola | cytosol | 0.48 | 2.02 |
| CDX79295 | Canola | cytosol, plastid | 0.48 | 2.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078G373 | UniProt:A0A078G373 | EnsemblPlants:CDY19874 | ProteinID:CDY19874 |
| ProteinID:CDY19874.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00009645001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDDA90 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g31400DBnaC09g31400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G373]
Coordinates
chrLK032101:+:171097..173801
Molecular Weight (calculated)
46166.9 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.706
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPQNAIG AGQQIPSDQQ AYHQQQLSWM MQQQQQQGQQ WNLQQQQSAP SQGQQPYGVG SQNPGSDNEI RSLWIGALQP WMDENYIMTV FAQTGEVQSA
101: KVIRNKLTGM CEGYGFVEFA NHAAAERVLQ TYNGTQMPNS DQTFRLNWAQ AGAGERRQAE GPEYTIFVGD LAPEVTDFML AETFSSVYAS VKGAKVMMDR
201: STGRTKGYGF VRFGDESEQM RAMVEMNGQY CSSRPMRLGP AANKKPLTML PGMYQDTQGG GNPGESDPSN TTIFVGALDA SVTDEELRAV FGQFGELTHV
301: KIPPGKRCGF VQYATRASAE HALLNLNGTQ LGGQSIRLSW GRSPNNQAQP HQAQWNGGGG YYGYPPQPQG FEPYGHGAPR PQDPSAYYGG GYGGYGNYQQ
401: QRQNLQVCCS YRCFLISMQ
101: KVIRNKLTGM CEGYGFVEFA NHAAAERVLQ TYNGTQMPNS DQTFRLNWAQ AGAGERRQAE GPEYTIFVGD LAPEVTDFML AETFSSVYAS VKGAKVMMDR
201: STGRTKGYGF VRFGDESEQM RAMVEMNGQY CSSRPMRLGP AANKKPLTML PGMYQDTQGG GNPGESDPSN TTIFVGALDA SVTDEELRAV FGQFGELTHV
301: KIPPGKRCGF VQYATRASAE HALLNLNGTQ LGGQSIRLSW GRSPNNQAQP HQAQWNGGGG YYGYPPQPQG FEPYGHGAPR PQDPSAYYGG GYGGYGNYQQ
401: QRQNLQVCCS YRCFLISMQ
001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
Arabidopsis Description
RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.