Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49760.1 | CDY01209 | AT4G14270.1 | 21798944 |
| AT1G49760.1 | CDY01210 | AT4G14270.1 | 21798944 |
| AT1G49760.1 | CDY12749 | AT4G14270.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018797.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY54068 | Canola | cytosol | 99.08 | 99.08 |
| AT1G49760.1 | Thale cress | cytosol | 92.04 | 89.57 |
| CDX79295 | Canola | cytosol, plastid | 12.25 | 80.0 |
| CDY08990 | Canola | cytosol | 11.79 | 77.78 |
| CDY67364 | Canola | nucleus | 33.84 | 75.43 |
| CDX89664 | Canola | cytosol | 70.6 | 75.08 |
| KRH70673 | Soybean | nucleus | 74.12 | 74.69 |
| CDX71223 | Canola | cytosol | 72.74 | 74.45 |
| KRH50336 | Soybean | cytosol | 74.12 | 74.35 |
| CDY62723 | Canola | cytosol | 69.98 | 74.07 |
| CDY51957 | Canola | cytosol, plastid | 70.14 | 73.99 |
| Solyc01g107870.2.1 | Tomato | extracellular | 72.43 | 73.56 |
| PGSC0003DMT400066245 | Potato | extracellular | 72.28 | 73.41 |
| CDX75397 | Canola | nucleus, plastid | 68.61 | 72.73 |
| CDX69025 | Canola | nucleus, plastid | 67.99 | 72.67 |
| CDY36634 | Canola | nucleus | 70.75 | 71.19 |
| CDY37229 | Canola | cytosol | 22.66 | 69.48 |
| CDY67365 | Canola | plastid | 30.93 | 69.18 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 62.63 | 66.94 |
| Os09t0115400-01 | Rice | nucleus | 67.84 | 66.92 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 66.62 | 66.82 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 66.46 | 66.67 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 66.31 | 66.51 |
| CDX79296 | Canola | plastid | 18.53 | 66.12 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 65.85 | 65.95 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 65.7 | 65.8 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 65.54 | 65.75 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 65.39 | 65.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.78 | 64.88 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 66.0 | 64.81 |
| EES12460 | Sorghum | plastid | 65.85 | 64.76 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 65.85 | 64.76 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 65.39 | 64.7 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 63.09 | 64.58 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 63.55 | 64.54 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 65.7 | 64.51 |
| Os04t0504800-01 | Rice | plasma membrane | 65.08 | 64.49 |
| KXG35258 | Sorghum | cytosol | 64.32 | 64.02 |
| Zm00001d005276_P007 | Maize | cytosol | 63.71 | 63.61 |
| Zm00001d019824_P004 | Maize | cytosol | 63.55 | 63.26 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 63.86 | 62.99 |
| HORVU5Hr1G050560.1 | Barley | plastid | 66.62 | 61.97 |
| CDX89562 | Canola | nucleus | 60.64 | 61.4 |
| CDY38939 | Canola | nucleus | 60.03 | 60.87 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 71.06 | 58.96 |
| CDY67921 | Canola | nucleus | 58.19 | 58.91 |
| CDY46079 | Canola | nucleus | 56.36 | 58.51 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 63.86 | 58.24 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.11 | 57.19 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 51.15 | 51.54 |
| CDX92325 | Canola | nucleus | 24.81 | 50.31 |
| CDY41472 | Canola | cytosol, plastid | 47.78 | 48.67 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.63 | 47.99 |
| CDY37935 | Canola | nucleus | 47.78 | 47.93 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 65.85 | 47.57 |
| CDX72826 | Canola | plastid | 49.62 | 47.37 |
| CDX96344 | Canola | plastid | 49.46 | 47.22 |
| CDY03685 | Canola | nucleus | 46.25 | 46.97 |
| CDY36684 | Canola | plastid | 47.47 | 46.62 |
| CDY72408 | Canola | plastid | 6.28 | 44.09 |
| CDY57754 | Canola | nucleus | 12.86 | 39.44 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.94 | 39.0 |
| CDY30168 | Canola | cytosol | 29.25 | 35.5 |
| CDY56198 | Canola | cytosol | 26.49 | 35.38 |
| CDX91689 | Canola | nucleus | 16.08 | 34.43 |
| CDY59539 | Canola | nucleus | 15.47 | 27.6 |
| CDY66740 | Canola | nucleus | 15.93 | 27.3 |
| CDY67617 | Canola | nucleus | 15.93 | 27.3 |
| CDY43894 | Canola | nucleus | 15.16 | 27.2 |
| CDY61476 | Canola | nucleus | 16.08 | 25.06 |
| CDY06734 | Canola | mitochondrion | 11.64 | 24.92 |
| CDY02486 | Canola | nucleus | 15.93 | 24.76 |
| CDY51403 | Canola | nucleus | 15.62 | 24.29 |
| CDY33092 | Canola | nucleus | 15.77 | 24.24 |
| CDY17286 | Canola | nucleus | 14.85 | 23.95 |
| CDX89287 | Canola | nucleus | 15.16 | 23.91 |
| CDY13992 | Canola | nucleus | 15.31 | 23.87 |
| CDY63384 | Canola | mitochondrion, nucleus | 15.16 | 23.68 |
| CDY29263 | Canola | nucleus | 15.16 | 23.63 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 15.47 | 23.49 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 15.47 | 23.49 |
| CDY34835 | Canola | nucleus | 14.09 | 23.41 |
| CDX92537 | Canola | nucleus | 14.85 | 23.15 |
| CDY14290 | Canola | nucleus | 14.7 | 23.02 |
| CDX95176 | Canola | nucleus | 14.7 | 22.91 |
| CDY19874 | Canola | nucleus | 14.7 | 22.91 |
| CDY52067 | Canola | nucleus | 14.7 | 22.91 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.85 | 22.77 |
| CDY46671 | Canola | nucleus | 14.85 | 22.61 |
| CDX99265 | Canola | nucleus | 14.55 | 22.41 |
| CDY22988 | Canola | nucleus | 14.4 | 22.38 |
| CDX95462 | Canola | nucleus | 14.85 | 22.35 |
| CDY18570 | Canola | nucleus | 14.85 | 22.35 |
| CDX92304 | Canola | nucleus | 14.4 | 22.17 |
| CDX82310 | Canola | nucleus | 13.94 | 22.09 |
| CDY66423 | Canola | nucleus | 14.4 | 22.07 |
| CDY16528 | Canola | nucleus | 13.63 | 20.99 |
| CDY68866 | Canola | nucleus | 13.32 | 20.96 |
| CDY32840 | Canola | nucleus | 13.48 | 20.9 |
| CDY50959 | Canola | nucleus | 13.63 | 20.7 |
| CDY29341 | Canola | nucleus | 13.17 | 20.53 |
| CDY28101 | Canola | nucleus | 13.48 | 20.51 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.55 | 18.74 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.47 | 18.53 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078IJ35 | UniProt:A0A078IJ35 | EnsemblPlants:CDY51045 |
| ProteinID:CDY51045 | ProteinID:CDY51045.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00098085001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI000253EBD7 | SEG:seg |
Description
BnaA06g03080DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ35]
Coordinates
chrLK032960:+:64501..68350
Molecular Weight (calculated)
70898.5 Da
IEP (calculated)
7.960
GRAVY (calculated)
-0.479
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQIQNANGG VAVSGAGAAA AVVGAGQQGT TSLYVGDLDQ TVTDSQLFEA FSQAGQVVSV RVCRDMTTRR SLGYGYVNYA TPQDATRALN ELNFMALNGR
101: AIRVMYSVRD PSVRKSGLGN IFIKNLDKSI DHKALHETFS AFGAILSCKV AVDPSGQSKG YGFVQYDTEE AAQRAIEQLN GMLLNDKQVY VGPFVHKQQR
201: DPSGEKVKFN NVYVKNLSES MSDEELKKVF GEFGVTTSCV IMRDGEGKSK GFGFVNFESS EDAAKAVEAL NGKTFDDKEW FVGRAQKKSE RENELKQKYE
301: QSLKEAADKS QGSNLYVKNL DESVTDEKLR EHFTSFGTIT SCKVMRDPTG VSRGSGFVAF STPEEASRAI AEMNGKMIVS KPLYVALAQR KEDRKARLQA
401: QFSQMRPVPA VGPRMPMYPP GGPPMGQQLF YGQGPPGMIP PQPGYGYQQQ LVPGMRPGGS PMPNFFMPMM QQGQQQQQQQ RPGGGGRRGG ALPQQPSPMM
501: QPQQMHPRGR MYRYPQRDVN PMPGLTPNML SVPYDVSGGG AHLRDSPAAS QPVPIGALAT SLANAAPEHQ RTMLGENLYP LVEQLEPESA AKVTGMLLEM
601: DQTEVLHLLE SPDALKAKVA EAMDVLRSVA QQQQAGGAAD QLASLSLGDN IVP
101: AIRVMYSVRD PSVRKSGLGN IFIKNLDKSI DHKALHETFS AFGAILSCKV AVDPSGQSKG YGFVQYDTEE AAQRAIEQLN GMLLNDKQVY VGPFVHKQQR
201: DPSGEKVKFN NVYVKNLSES MSDEELKKVF GEFGVTTSCV IMRDGEGKSK GFGFVNFESS EDAAKAVEAL NGKTFDDKEW FVGRAQKKSE RENELKQKYE
301: QSLKEAADKS QGSNLYVKNL DESVTDEKLR EHFTSFGTIT SCKVMRDPTG VSRGSGFVAF STPEEASRAI AEMNGKMIVS KPLYVALAQR KEDRKARLQA
401: QFSQMRPVPA VGPRMPMYPP GGPPMGQQLF YGQGPPGMIP PQPGYGYQQQ LVPGMRPGGS PMPNFFMPMM QQGQQQQQQQ RPGGGGRRGG ALPQQPSPMM
501: QPQQMHPRGR MYRYPQRDVN PMPGLTPNML SVPYDVSGGG AHLRDSPAAS QPVPIGALAT SLANAAPEHQ RTMLGENLYP LVEQLEPESA AKVTGMLLEM
601: DQTEVLHLLE SPDALKAKVA EAMDVLRSVA QQQQAGGAAD QLASLSLGDN IVP
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.