Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 93.83 | 96.3 |
| CDX72826 | Canola | plastid | 87.97 | 85.53 |
| CDX96344 | Canola | plastid | 87.97 | 85.53 |
| CDY37935 | Canola | nucleus | 78.65 | 80.34 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 80.75 | 78.74 |
| CDY03685 | Canola | nucleus | 74.29 | 76.83 |
| CDY41472 | Canola | cytosol, plastid | 66.47 | 68.95 |
| CDX91689 | Canola | nucleus | 26.32 | 57.38 |
| CDY67365 | Canola | plastid | 24.06 | 54.79 |
| CDX79295 | Canola | cytosol, plastid | 7.97 | 53.0 |
| CDY08990 | Canola | cytosol | 7.82 | 52.53 |
| PGSC0003DMT400064531 | Potato | cytosol | 41.5 | 51.88 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 51.13 | 51.59 |
| KRG91724 | Soybean | cytosol | 49.47 | 50.46 |
| CDY51957 | Canola | cytosol, plastid | 46.77 | 50.24 |
| CDY62723 | Canola | cytosol | 46.47 | 50.08 |
| CDX75397 | Canola | nucleus, plastid | 46.17 | 49.84 |
| CDX69025 | Canola | nucleus, plastid | 45.56 | 49.59 |
| CDX89664 | Canola | cytosol | 45.71 | 49.51 |
| KRH08608 | Soybean | endoplasmic reticulum | 48.57 | 48.5 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 48.42 | 48.35 |
| CDX71223 | Canola | cytosol | 45.86 | 47.81 |
| KRH70233 | Soybean | cytosol | 45.11 | 47.69 |
| CDX89562 | Canola | nucleus | 46.17 | 47.6 |
| CDY46079 | Canola | nucleus | 44.96 | 47.54 |
| CDY38939 | Canola | nucleus | 46.02 | 47.52 |
| CDY51045 | Canola | cytosol | 46.62 | 47.47 |
| CDY54068 | Canola | cytosol | 46.62 | 47.47 |
| CDY36634 | Canola | nucleus | 45.41 | 46.53 |
| CDY67921 | Canola | nucleus | 44.96 | 46.36 |
| CDY72408 | Canola | plastid | 6.47 | 46.24 |
| CDY67364 | Canola | nucleus | 18.95 | 43.0 |
| CDY57754 | Canola | nucleus | 12.18 | 38.03 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.43 | 38.0 |
| CDX79296 | Canola | plastid | 10.23 | 37.16 |
| CDX92325 | Canola | nucleus | 16.54 | 34.16 |
| CDY37229 | Canola | cytosol | 10.53 | 32.86 |
| CDY30168 | Canola | cytosol | 26.47 | 32.71 |
| CDY56198 | Canola | cytosol | 23.46 | 31.9 |
| CDY43894 | Canola | nucleus | 14.14 | 25.82 |
| CDY59539 | Canola | nucleus | 14.14 | 25.68 |
| CDY66740 | Canola | nucleus | 14.59 | 25.46 |
| CDY67617 | Canola | nucleus | 14.59 | 25.46 |
| CDY06734 | Canola | mitochondrion | 11.13 | 24.26 |
| CDY13992 | Canola | nucleus | 13.98 | 22.2 |
| CDY17286 | Canola | nucleus | 13.38 | 21.98 |
| CDX89287 | Canola | nucleus | 13.53 | 21.74 |
| CDX92537 | Canola | nucleus | 13.68 | 21.72 |
| CDY29263 | Canola | nucleus | 13.53 | 21.48 |
| CDY46671 | Canola | nucleus | 13.83 | 21.45 |
| CDY34835 | Canola | nucleus | 12.63 | 21.37 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 13.68 | 21.36 |
| CDY19874 | Canola | nucleus | 13.38 | 21.24 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.68 | 21.16 |
| CDY14290 | Canola | nucleus | 13.23 | 21.1 |
| CDX95176 | Canola | nucleus | 13.23 | 21.0 |
| CDY61476 | Canola | nucleus | 13.23 | 21.0 |
| CDY02486 | Canola | nucleus | 13.23 | 20.95 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.53 | 20.93 |
| CDY52067 | Canola | nucleus | 13.08 | 20.76 |
| CDX99265 | Canola | nucleus | 13.23 | 20.75 |
| CDY66423 | Canola | nucleus | 13.23 | 20.66 |
| CDY18570 | Canola | nucleus | 13.38 | 20.51 |
| CDY51403 | Canola | nucleus | 12.93 | 20.48 |
| CDX82310 | Canola | nucleus | 12.63 | 20.39 |
| CDY16528 | Canola | nucleus | 12.93 | 20.28 |
| CDX92304 | Canola | nucleus | 12.93 | 20.28 |
| CDY22988 | Canola | nucleus | 12.78 | 20.24 |
| CDY33092 | Canola | nucleus | 12.93 | 20.24 |
| CDY32840 | Canola | nucleus | 12.78 | 20.19 |
| CDX95462 | Canola | nucleus | 13.08 | 20.05 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.48 | 19.86 |
| CDY29341 | Canola | nucleus | 12.48 | 19.81 |
| CDY50959 | Canola | nucleus | 12.78 | 19.77 |
| CDY28101 | Canola | nucleus | 12.63 | 19.58 |
| CDY68866 | Canola | nucleus | 12.18 | 19.52 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 12.63 | 16.57 |
| CDX81822 | Canola | mitochondrion, nucleus | 12.93 | 15.78 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078HH07 | UniProt:A0A078HH07 | EnsemblPlants:CDY36684 |
| ProteinID:CDY36684 | ProteinID:CDY36684.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00062453001 |
| InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PRINTS:PR00961 | PFscan:PS50102 |
| PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 |
| UniParc:UPI0004EF334F | SEG:seg | : | : | : | : |
Description
BnaCnng07860DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH07]
Coordinates
chrLK032381:+:227648..230635
Molecular Weight (calculated)
72813.0 Da
IEP (calculated)
8.387
GRAVY (calculated)
-0.424
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVASGIA PTTAMVDQVI PNQPAVTVAS PPHATQVAAV AAAAAEVLQT HPNSSLYVGD LDQTVNEAHL LDLFNQVAPV QTVRVCRDLT RRSLGYAYVN
101: FANPDDAMRA MDILNYTPIK DRPIRIMRSN RDPSTRLSGK GNVFIKNLDL TIDNKALYDT FSSFGTILSC KVAMDGTGKS RGYGFVQFEK EETAQAAIDK
201: LNGMLLNDKQ VFVGPFVRRQ DRTRESGAVP RFTNVYVKNL PKEITDDELK KTFGKYGEIS SAVVVKDESG NSRCFGFVNF ESPEAAAVAV EKMNGISLGE
301: DVLYVGRAQK KAERGEELRR KYEQERLEKS NGTNLYVKNL DDGVNDEKLK EMFAEYGDVT SSKVMTNPEG LSRGFGFVAY SSPEEALKAM NEMNGKMIGR
401: KPLYIAFAQR KEERRTHLQT MFSMRPNAPM GGFHHHPTGG PAAGPHHQMY MGQNGQGLVP SQPMGYGYQL QFMPGVRPGA GPANFMMPYP LQRPNQPGPR
501: FGFRRGAPNM QHNFQQQQQM MQHNVNSGMR YMGGPGNRMN GVEAAAPQGI VDASAISHNA SQNPQRPPLL PISKLTSALA LASPSNHSQI LGEQLYPLVE
601: KQEPVHVAKV TGMLLEMDQA EILHLLESPE ALKAKVSMAL DVLRLSANPS AVSSVDDQFA PSSTE
101: FANPDDAMRA MDILNYTPIK DRPIRIMRSN RDPSTRLSGK GNVFIKNLDL TIDNKALYDT FSSFGTILSC KVAMDGTGKS RGYGFVQFEK EETAQAAIDK
201: LNGMLLNDKQ VFVGPFVRRQ DRTRESGAVP RFTNVYVKNL PKEITDDELK KTFGKYGEIS SAVVVKDESG NSRCFGFVNF ESPEAAAVAV EKMNGISLGE
301: DVLYVGRAQK KAERGEELRR KYEQERLEKS NGTNLYVKNL DDGVNDEKLK EMFAEYGDVT SSKVMTNPEG LSRGFGFVAY SSPEEALKAM NEMNGKMIGR
401: KPLYIAFAQR KEERRTHLQT MFSMRPNAPM GGFHHHPTGG PAAGPHHQMY MGQNGQGLVP SQPMGYGYQL QFMPGVRPGA GPANFMMPYP LQRPNQPGPR
501: FGFRRGAPNM QHNFQQQQQM MQHNVNSGMR YMGGPGNRMN GVEAAAPQGI VDASAISHNA SQNPQRPPLL PISKLTSALA LASPSNHSQI LGEQLYPLVE
601: KQEPVHVAKV TGMLLEMDQA EILHLLESPE ALKAKVSMAL DVLRLSANPS AVSSVDDQFA PSSTE
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Arabidopsis Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.