Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92304 | Canola | nucleus | 97.41 | 97.41 |
| CDX82310 | Canola | nucleus | 84.67 | 87.14 |
| CDY22988 | Canola | nucleus | 85.85 | 86.67 |
| CDX95462 | Canola | nucleus | 88.21 | 86.18 |
| CDY18570 | Canola | nucleus | 87.97 | 85.94 |
| AT3G19130.1 | Thale cress | nucleus | 80.9 | 78.85 |
| CDY28101 | Canola | nucleus | 75.94 | 75.06 |
| CDY16528 | Canola | nucleus | 74.76 | 74.76 |
| CDY50959 | Canola | nucleus | 75.71 | 74.65 |
| CDY29341 | Canola | nucleus | 72.88 | 73.75 |
| CDY32840 | Canola | nucleus | 73.11 | 73.63 |
| CDY68866 | Canola | nucleus | 71.7 | 73.25 |
| Solyc01g108500.2.1 | Tomato | nucleus | 61.56 | 63.2 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 60.85 | 62.32 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.32 | 61.9 |
| KRH50251 | Soybean | nucleus | 60.61 | 59.63 |
| GSMUA_Achr10P... | Banana | nucleus | 43.87 | 59.24 |
| KRH71168 | Soybean | nucleus | 60.14 | 59.16 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 43.4 | 58.97 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 43.16 | 58.65 |
| Solyc10g050860.1.1 | Tomato | nucleus | 58.73 | 58.18 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 42.45 | 57.51 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 44.34 | 54.97 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 44.34 | 54.97 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 44.1 | 54.68 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 31.84 | 52.12 |
| CDY52067 | Canola | nucleus | 50.71 | 51.31 |
| CDX95176 | Canola | nucleus | 50.47 | 51.07 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.45 | 50.34 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 47.41 | 49.88 |
| CDY06734 | Canola | mitochondrion | 35.85 | 49.84 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 43.4 | 48.55 |
| Os04t0449900-01 | Rice | plastid | 44.1 | 48.32 |
| KXG35789 | Sorghum | nucleus | 49.29 | 47.72 |
| Zm00001d020748_P002 | Maize | plasma membrane | 48.58 | 47.58 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 47.41 | 47.41 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 48.35 | 47.34 |
| CDY34835 | Canola | nucleus | 42.92 | 46.31 |
| TraesCS2A01G317700.2 | Wheat | plastid | 46.23 | 46.23 |
| TraesCS2D01G315400.2 | Wheat | plastid | 46.23 | 46.23 |
| TraesCS2B01G335700.1 | Wheat | plastid | 45.75 | 46.19 |
| CDX89287 | Canola | nucleus | 44.81 | 45.89 |
| CDY14290 | Canola | nucleus | 45.05 | 45.8 |
| CDY66423 | Canola | nucleus | 45.75 | 45.54 |
| EES10898 | Sorghum | nucleus | 45.28 | 45.39 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 44.58 | 45.32 |
| CDY29263 | Canola | nucleus | 44.1 | 44.63 |
| CDY46671 | Canola | nucleus | 45.05 | 44.52 |
| CDY17286 | Canola | nucleus | 42.45 | 44.44 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.58 | 44.37 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 43.63 | 44.36 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 45.05 | 43.31 |
| EES05289 | Sorghum | plastid | 44.34 | 43.22 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 43.4 | 43.09 |
| Zm00001d050838_P001 | Maize | plastid | 43.63 | 43.02 |
| CDY19874 | Canola | nucleus | 42.22 | 42.72 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 44.1 | 41.01 |
| CDX92537 | Canola | nucleus | 39.86 | 40.33 |
| CDY13992 | Canola | nucleus | 39.86 | 40.33 |
| Zm00001d025551_P002 | Maize | plastid | 42.69 | 40.04 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 40.33 | 39.77 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 44.34 | 39.66 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 40.09 | 39.53 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 43.4 | 36.29 |
| CDY63384 | Canola | mitochondrion, nucleus | 27.12 | 27.51 |
| CDY61476 | Canola | nucleus | 25.47 | 25.78 |
| CDY02486 | Canola | nucleus | 25.47 | 25.71 |
| CDY51403 | Canola | nucleus | 25.0 | 25.24 |
| CDY33092 | Canola | nucleus | 25.24 | 25.18 |
| CDY67365 | Canola | plastid | 15.8 | 22.95 |
| CDX81822 | Canola | mitochondrion, nucleus | 27.12 | 21.1 |
| CDY72408 | Canola | plastid | 3.77 | 17.2 |
| CDY57754 | Canola | nucleus | 8.25 | 16.43 |
| CDY59539 | Canola | nucleus | 13.68 | 15.85 |
| CDY66740 | Canola | nucleus | 13.92 | 15.49 |
| CDY67617 | Canola | nucleus | 13.92 | 15.49 |
| CDY43894 | Canola | nucleus | 13.21 | 15.38 |
| CDX89664 | Canola | cytosol | 21.7 | 14.98 |
| CDY56198 | Canola | cytosol | 17.22 | 14.93 |
| CDX69025 | Canola | nucleus, plastid | 21.46 | 14.89 |
| CDY54068 | Canola | cytosol | 22.64 | 14.7 |
| CDX75397 | Canola | nucleus, plastid | 21.23 | 14.61 |
| CDY62723 | Canola | cytosol | 21.23 | 14.59 |
| CDY51045 | Canola | cytosol | 22.41 | 14.55 |
| CDY51957 | Canola | cytosol, plastid | 21.23 | 14.54 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.84 | 14.5 |
| CDX71223 | Canola | cytosol | 21.46 | 14.26 |
| CDY38939 | Canola | nucleus | 21.46 | 14.13 |
| CDX89562 | Canola | nucleus | 21.46 | 14.11 |
| CDY30168 | Canola | cytosol | 17.69 | 13.94 |
| CDY46079 | Canola | nucleus | 20.52 | 13.83 |
| CDY03685 | Canola | nucleus | 20.75 | 13.69 |
| CDY41472 | Canola | cytosol, plastid | 20.52 | 13.57 |
| CDY36634 | Canola | nucleus | 20.75 | 13.56 |
| CDY37935 | Canola | nucleus | 20.75 | 13.52 |
| CDY36684 | Canola | plastid | 20.75 | 13.23 |
| CDY67921 | Canola | nucleus | 20.05 | 13.18 |
| CDX72826 | Canola | plastid | 21.23 | 13.16 |
| CDX96344 | Canola | plastid | 21.23 | 13.16 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.81 | 12.96 |
| CDX79296 | Canola | plastid | 4.72 | 10.93 |
| CDX92325 | Canola | nucleus | 5.66 | 7.45 |
| CDY67364 | Canola | nucleus | 4.25 | 6.14 |
| CDX91689 | Canola | nucleus | 3.07 | 4.26 |
| CDY37229 | Canola | cytosol | 1.42 | 2.82 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX99265 | EnsemblPlantsGene:GSBRNA2T00107515001 | Gene3D:3.30.70.330 | GO:A0A078EAY0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF6 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX99265 | ProteinID:CDX99265.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF3997 | MapMan:16.9.4 | : |
Description
BnaC05g33800D
Coordinates
chrLK031909:+:679219..681831
Molecular Weight (calculated)
46960.4 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.749
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNGSDST SATPPANQTT PPPPQQWQQH QQWMMQYPGA AAMMMMQHQQ QHMMMYPHQY LPYNHGGHYH HHPPHLQYAP YHQQHHNHHQ KTHERGGSGE
101: DVKTLWVGDL LHWMDETYLH TCFSHTGEVS SVKVIRNKQT LQSEGYGFVE FLTRAAAEEV LQSFSGSIMP NSEQAFRLNW ASFSTGEKRA VENGPELSIF
201: VGDLSPDVTD SMLQELFAER YPSVKSAKVV IDSNTGRSKG YGFVRFGDES ERSRALSEMN GALCSNRQMR VGVATPKRAV ANQQQHSSQA VIVAGGHGAN
301: GFTAHGSQSD GDSNNSTIFV GGLDPDVTEE DLREPFIQFG EVVSVKIPLG KGCGFVQLSN RKSADDAIQS LNGTVIGKNT VRLSWGRTPN KQWRGDNGGY
401: SRGQGYNNGG YANHHDSNTY PAET
101: DVKTLWVGDL LHWMDETYLH TCFSHTGEVS SVKVIRNKQT LQSEGYGFVE FLTRAAAEEV LQSFSGSIMP NSEQAFRLNW ASFSTGEKRA VENGPELSIF
201: VGDLSPDVTD SMLQELFAER YPSVKSAKVV IDSNTGRSKG YGFVRFGDES ERSRALSEMN GALCSNRQMR VGVATPKRAV ANQQQHSSQA VIVAGGHGAN
301: GFTAHGSQSD GDSNNSTIFV GGLDPDVTEE DLREPFIQFG EVVSVKIPLG KGCGFVQLSN RKSADDAIQS LNGTVIGKNT VRLSWGRTPN KQWRGDNGGY
401: SRGQGYNNGG YANHHDSNTY PAET
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.