Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35789 | Sorghum | nucleus | 94.69 | 93.61 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 72.29 | 91.52 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 72.06 | 91.23 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 72.06 | 91.23 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 88.45 | 90.33 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 87.07 | 87.07 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 60.51 | 83.97 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 58.2 | 80.77 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 75.52 | 74.15 |
| KRH61258 | Soybean | nucleus | 61.89 | 65.53 |
| KRH05723 | Soybean | nucleus | 62.36 | 65.38 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 62.82 | 65.07 |
| PGSC0003DMT400020621 | Potato | nucleus | 59.12 | 64.65 |
| KRH15315 | Soybean | nucleus | 61.89 | 63.06 |
| KRH51956 | Soybean | nucleus | 59.12 | 62.29 |
| Bra027446.1-P | Field mustard | cytosol | 45.73 | 61.88 |
| Zm00001d050838_P001 | Maize | plastid | 60.28 | 60.7 |
| Solyc04g079310.2.1 | Tomato | nucleus | 61.2 | 58.76 |
| Zm00001d025551_P002 | Maize | plastid | 61.2 | 58.63 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 55.43 | 57.97 |
| CDY06734 | Canola | mitochondrion | 39.72 | 56.39 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 60.05 | 54.85 |
| AT1G47500.1 | Thale cress | nucleus | 54.73 | 54.61 |
| Solyc01g108500.2.1 | Tomato | nucleus | 51.5 | 54.0 |
| AT1G47490.1 | Thale cress | nucleus | 53.81 | 53.94 |
| Zm00001d009512_P001 | Maize | mitochondrion | 16.4 | 53.79 |
| CDX95176 | Canola | nucleus | 51.96 | 53.7 |
| CDY52067 | Canola | nucleus | 51.73 | 53.46 |
| KRH50251 | Soybean | nucleus | 53.12 | 53.36 |
| PGSC0003DMT400066648 | Potato | nucleus | 51.73 | 53.33 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 48.04 | 53.33 |
| KRH71168 | Soybean | nucleus | 52.89 | 53.13 |
| Solyc10g050860.1.1 | Tomato | nucleus | 51.96 | 52.57 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 16.86 | 51.41 |
| Zm00001d013812_P001 | Maize | nucleus | 48.04 | 51.23 |
| CDY16528 | Canola | nucleus | 49.19 | 50.24 |
| CDY28101 | Canola | nucleus | 49.42 | 49.88 |
| CDY32840 | Canola | nucleus | 48.5 | 49.88 |
| CDY50959 | Canola | nucleus | 49.42 | 49.77 |
| AT3G19130.1 | Thale cress | nucleus | 49.88 | 49.66 |
| CDY29341 | Canola | nucleus | 47.81 | 49.4 |
| Zm00001d010739_P001 | Maize | mitochondrion | 14.09 | 49.19 |
| CDX92304 | Canola | nucleus | 48.04 | 49.06 |
| CDY22988 | Canola | nucleus | 47.58 | 49.05 |
| Bra022389.1-P | Field mustard | nucleus | 48.04 | 48.83 |
| CDY68866 | Canola | nucleus | 46.65 | 48.67 |
| CDX99265 | Canola | nucleus | 47.58 | 48.58 |
| Bra001735.1-P | Field mustard | nucleus | 46.19 | 48.54 |
| CDX82310 | Canola | nucleus | 46.19 | 48.54 |
| CDY18570 | Canola | nucleus | 48.5 | 48.39 |
| CDX95462 | Canola | nucleus | 48.27 | 48.16 |
| Bra040663.1-P | Field mustard | nucleus | 40.42 | 47.04 |
| Zm00001d026346_P002 | Maize | extracellular | 45.96 | 46.5 |
| AT1G49600.3 | Thale cress | nucleus | 46.88 | 45.11 |
| Zm00001d002244_P003 | Maize | nucleus | 46.42 | 44.87 |
| Bra037538.1-P | Field mustard | nucleus | 41.57 | 44.66 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 45.73 | 43.42 |
| Zm00001d007929_P002 | Maize | nucleus | 34.87 | 42.06 |
| Zm00001d021149_P001 | Maize | cytosol | 15.7 | 41.21 |
| Zm00001d021633_P006 | Maize | nucleus | 44.11 | 41.08 |
| Zm00001d006496_P004 | Maize | nucleus | 44.8 | 35.73 |
| Bra014216.1-P | Field mustard | nucleus | 42.03 | 31.82 |
| Zm00001d016252_P001 | Maize | nucleus | 26.56 | 30.59 |
| Zm00001d026528_P001 | Maize | plastid | 13.63 | 26.82 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 15.7 | 25.37 |
| Zm00001d027869_P002 | Maize | nucleus | 41.8 | 23.72 |
| Zm00001d031525_P004 | Maize | nucleus | 25.4 | 23.61 |
| Zm00001d048824_P004 | Maize | nucleus | 23.56 | 22.82 |
| Zm00001d049759_P003 | Maize | nucleus | 22.4 | 21.18 |
| Zm00001d026522_P001 | Maize | nucleus | 10.85 | 19.26 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 14.55 | 17.65 |
| Zm00001d032807_P001 | Maize | nucleus | 14.32 | 17.27 |
| Zm00001d046487_P001 | Maize | cytosol | 21.48 | 14.46 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 21.71 | 14.42 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 21.02 | 13.96 |
| Zm00001d005276_P007 | Maize | cytosol | 20.79 | 13.76 |
| Zm00001d019824_P004 | Maize | cytosol | 20.79 | 13.72 |
| Zm00001d047790_P001 | Maize | plastid | 21.48 | 12.65 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:B4G0R6 | EMBL:BT042954 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:ONM55528.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00017B7670 | EnsemblPlantsGene:Zm00001d020748 | EnsemblPlants:Zm00001d020748_P002 |
| EnsemblPlants:Zm00001d020748_T002 | SEG:seg | : | : | : | : |
Description
Polyadenylate-binding protein RBP47B
Coordinates
chr7:+:131102022..131106713
Molecular Weight (calculated)
46230.9 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.452
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAAAAAANG AGDVQKPQQQ PLVAGAPPPP PPAAVVPPHW VAMPFAPPPG AAAMVMQPHH MAPPPPQFAP THFVPFHAVA PPRAAAVALG SPAPHQPGQE
101: ENKSVWVGDL HYWMDENYLH SCFGYTGEVV AIKVIRNKQT GQSEGYGFVE FYSHAAAEKV LEGFSGHIMP NTDQPFRLNW ASFSMGDRRS DSASDHSIFV
201: GDLASDVNDA TLLEAFSSRY SSVKGAKVVI DANTGRSKGY GFVRFGDDSE KTQAMTEMNG VYCSSRPMRI GPATPRKSSG TSGSNGSAAR SDGGDLTNTT
301: VFVGGLDPNV SEEDLRQTFS QYGEISSVKI PIGKQCGFVQ FAQRKNAEDA LQGLNGSTIG KQNVRLSWGR NPANKQFRGD NGNQWNNGGM YYAAPPFYNG
401: YGYPAAAPFP DPGMYAAPAY GAYPFYGNQQ QVS
101: ENKSVWVGDL HYWMDENYLH SCFGYTGEVV AIKVIRNKQT GQSEGYGFVE FYSHAAAEKV LEGFSGHIMP NTDQPFRLNW ASFSMGDRRS DSASDHSIFV
201: GDLASDVNDA TLLEAFSSRY SSVKGAKVVI DANTGRSKGY GFVRFGDDSE KTQAMTEMNG VYCSSRPMRI GPATPRKSSG TSGSNGSAAR SDGGDLTNTT
301: VFVGGLDPNV SEEDLRQTFS QYGEISSVKI PIGKQCGFVQ FAQRKNAEDA LQGLNGSTIG KQNVRLSWGR NPANKQFRGD NGNQWNNGGM YYAAPPFYNG
401: YGYPAAAPFP DPGMYAAPAY GAYPFYGNQQ QVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.