Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06840_001 | Banana | nucleus | 91.67 | 91.67 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 85.26 | 77.78 |
| GSMUA_Achr10P... | Banana | nucleus | 78.21 | 77.71 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 84.94 | 77.49 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 84.94 | 77.49 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 75.96 | 75.72 |
| Bra027446.1-P | Field mustard | cytosol | 63.46 | 61.88 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 85.26 | 61.43 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 83.01 | 61.08 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 63.78 | 60.67 |
| Zm00001d020748_P002 | Maize | plasma membrane | 83.97 | 60.51 |
| KXG35789 | Sorghum | nucleus | 84.94 | 60.5 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 84.29 | 59.64 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 63.14 | 59.52 |
| PGSC0003DMT400020621 | Potato | nucleus | 74.04 | 58.33 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 76.92 | 57.42 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 74.04 | 57.32 |
| CDY06734 | Canola | mitochondrion | 55.45 | 56.72 |
| KRH61258 | Soybean | nucleus | 73.4 | 55.99 |
| KRH05723 | Soybean | nucleus | 74.04 | 55.93 |
| KRH15315 | Soybean | nucleus | 74.04 | 54.35 |
| KRH51956 | Soybean | nucleus | 70.83 | 53.77 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 69.55 | 52.42 |
| Solyc04g079310.2.1 | Tomato | nucleus | 73.72 | 51.0 |
| AT1G47500.1 | Thale cress | nucleus | 70.19 | 50.46 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 62.82 | 50.26 |
| AT1G47490.1 | Thale cress | nucleus | 68.59 | 49.54 |
| KRH50251 | Soybean | nucleus | 67.63 | 48.96 |
| KRH71168 | Soybean | nucleus | 67.63 | 48.96 |
| Solyc01g108500.2.1 | Tomato | nucleus | 64.42 | 48.67 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 61.86 | 48.25 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 62.82 | 48.16 |
| PGSC0003DMT400066648 | Potato | nucleus | 64.74 | 48.1 |
| CDY52067 | Canola | nucleus | 63.46 | 47.26 |
| Solyc10g050860.1.1 | Tomato | nucleus | 64.74 | 47.2 |
| CDX95176 | Canola | nucleus | 63.14 | 47.02 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 21.79 | 46.26 |
| CDY29341 | Canola | nucleus | 61.86 | 46.06 |
| CDY68866 | Canola | nucleus | 61.22 | 46.02 |
| CDY32840 | Canola | nucleus | 61.86 | 45.84 |
| CDY16528 | Canola | nucleus | 62.18 | 45.75 |
| CDY28101 | Canola | nucleus | 62.82 | 45.69 |
| CDY50959 | Canola | nucleus | 62.5 | 45.35 |
| GSMUA_Achr10P... | Banana | nucleus | 62.5 | 44.93 |
| CDY22988 | Canola | nucleus | 59.62 | 44.29 |
| Bra001735.1-P | Field mustard | nucleus | 58.33 | 44.17 |
| CDX82310 | Canola | nucleus | 58.33 | 44.17 |
| Bra040663.1-P | Field mustard | nucleus | 52.24 | 43.82 |
| AT3G19130.1 | Thale cress | nucleus | 60.9 | 43.68 |
| CDX99265 | Canola | nucleus | 58.97 | 43.4 |
| CDX92304 | Canola | nucleus | 58.97 | 43.4 |
| Bra022389.1-P | Field mustard | nucleus | 58.97 | 43.19 |
| CDY18570 | Canola | nucleus | 59.62 | 42.86 |
| CDX95462 | Canola | nucleus | 59.29 | 42.63 |
| Bra037538.1-P | Field mustard | nucleus | 51.92 | 40.2 |
| AT1G49600.3 | Thale cress | nucleus | 57.69 | 40.0 |
| Bra014216.1-P | Field mustard | nucleus | 53.21 | 29.02 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 31.73 | 23.4 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 30.13 | 23.15 |
| GSMUA_Achr10P... | Banana | mitochondrion | 31.41 | 23.06 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 32.05 | 23.04 |
| GSMUA_Achr11P... | Banana | nucleus | 31.41 | 22.07 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 29.81 | 18.75 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 25.32 | 16.32 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 16.67 | 14.21 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 28.53 | 13.67 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 27.88 | 13.53 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 27.88 | 13.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.88 | 13.34 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 25.0 | 11.71 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 22.76 | 10.96 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 25.0 | 10.91 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 26.6 | 9.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P15210_001 | EnsemblPlants:GSMUA_Achr9T15210_001 | EnsemblPlantsGene:GSMUA_Achr9G15210_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00029613E1 | UniProt:M0U0H9 | MapMan:16.9.4 | : |
Description
Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr9G15210_001]
Coordinates
chr9:-:9956253..9961867
Molecular Weight (calculated)
34055.6 Da
IEP (calculated)
6.932
GRAVY (calculated)
-0.496
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MDENYLHNCF GHTGEVVSIK VIRNKQTGQS EGYGFVEFYT HAAAEKVLQN FGGHTMPNTD QPFRLNWASF SMGDRRSDAS SDYSIFVGDL ASDVTDATLQ
101: EIFASKYPSV KGAKVVIDAN TGRSKGYGFV RFGNENEKTL SMTEMNGVYC STRPMRIGPA TPRKSSGVSG SNGSSAQSDG DLTNTTVFVG GLDPNVSEDD
201: LKRTFSLYGE IASVKIPVGK QCGFVQFVQR NNAEEALQGL NGTVIGKQTV RLSWGRNPAN KQLRSDLGNQ WNGMYYGGQF YNGYVYAAPV PDPSMYAAYG
301: AYSFYGNQQQ VS
101: EIFASKYPSV KGAKVVIDAN TGRSKGYGFV RFGNENEKTL SMTEMNGVYC STRPMRIGPA TPRKSSGVSG SNGSSAQSDG DLTNTTVFVG GLDPNVSEDD
201: LKRTFSLYGE IASVKIPVGK QCGFVQFVQR NNAEEALQGL NGTVIGKQTV RLSWGRNPAN KQLRSDLGNQ WNGMYYGGQF YNGYVYAAPV PDPSMYAAYG
301: AYSFYGNQQQ VS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.