Factsheet for GSMUA_Achr8P24250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11420_001
GSMUA_Achr3P19230_001
GSMUA_Achr6P18240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	GSMUA_Achr2P11420_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr3P19230_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr6P18240_001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09890_001	Banana	cytosol	66.51	66.1
GSMUA_AchrUn_...	Banana	cytosol	64.97	64.57
GSMUA_Achr9P00990_001	Banana	cytosol	62.04	61.75
VIT_07s0031g00210.t01	Wine grape	cytosol	59.88	59.33
VIT_18s0001g10170.t01	Wine grape	cytosol	57.87	58.59
KRH70673	Soybean	nucleus	57.87	57.87
KRH05656	Soybean	endoplasmic reticulum, nucleus	57.87	57.34
KRH50336	Soybean	cytosol	57.56	57.3
GSMUA_Achr4P20270_001	Banana	cytosol	56.64	57.08
KRH15385	Soybean	nucleus	57.25	56.9
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	53.09	56.3
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	56.17	55.83
EES12460	Sorghum	plastid	56.48	55.12
Zm00001d025801_P005	Maize	cytosol, plastid	55.25	54.91
Os04t0504800-01	Rice	plasma membrane	55.71	54.78
KRH52023	Soybean	cytosol, endoplasmic reticulum	53.24	54.76
TraesCS2D01G358000.1	Wheat	cytosol	55.86	54.52
TraesCS2A01G359000.1	Wheat	cytosol	55.86	54.44
TraesCS2B01G378400.1	Wheat	nucleus	55.86	54.44
CDY67364	Canola	nucleus	24.54	54.27
KRH61326	Soybean	cytosol, endoplasmic reticulum	52.62	54.13
Bra011488.1-P	Field mustard	cytosol, plastid	50.77	53.67
CDY62723	Canola	cytosol	51.08	53.65
CDX75397	Canola	nucleus, plastid	50.93	53.57
CDX69025	Canola	nucleus, plastid	50.46	53.52
Bra034603.1-P	Field mustard	cytosol, plastid	51.08	53.47
Bra013104.1-P	Field mustard	cytosol	50.77	53.41
CDY51957	Canola	cytosol, plastid	50.93	53.31
AT4G34110.1	Thale cress	cytosol	51.7	53.26
CDX89664	Canola	cytosol	50.46	53.26
CDX79296	Canola	plastid	14.97	53.01
CDX71223	Canola	cytosol	51.23	52.04
CDY54068	Canola	cytosol	51.85	51.45
CDY51045	Canola	cytosol	51.54	51.15
Bra018797.1-P	Field mustard	cytosol	51.54	51.15
AT1G49760.1	Thale cress	cytosol	52.16	50.37
CDY36634	Canola	nucleus	50.0	49.92
CDY67365	Canola	plastid	22.38	49.66
Bra015220.1-P	Field mustard	cytosol	43.83	49.13
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	58.33	48.03
PGSC0003DMT400012508	Potato	nucleus	9.1	47.58
GSMUA_Achr5P24940_001	Banana	plastid	45.37	44.14
GSMUA_Achr7P05430_001	Banana	nucleus	58.33	41.81
Bra022413.1-P	Field mustard	cytosol	28.55	41.48
CDX92325	Canola	nucleus	20.52	41.3
GSMUA_Achr4P00840_001	Banana	cytosol	22.69	30.37
GSMUA_Achr9P10860_001	Banana	cytosol	32.72	29.65
CDX91689	Canola	nucleus	12.81	27.21
GSMUA_Achr6P10190_001	Banana	nucleus	11.42	23.64
GSMUA_Achr3P06840_001	Banana	nucleus	11.11	23.08
GSMUA_Achr10P...	Banana	nucleus	11.11	22.93
GSMUA_Achr9P15210_001	Banana	nucleus	10.96	22.76
GSMUA_Achr5P20140_001	Banana	nucleus	12.81	22.68
GSMUA_Achr6P29410_001	Banana	nucleus	11.27	22.26
GSMUA_Achr9P24980_001	Banana	cytosol	11.27	22.05
GSMUA_Achr9P14120_001	Banana	nucleus	13.27	21.18
GSMUA_Achr6P11660_001	Banana	mitochondrion	13.12	20.09
GSMUA_Achr8P31320_001	Banana	nucleus	12.35	20.0
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	12.5	19.9
GSMUA_Achr11P...	Banana	nucleus	13.43	19.59
GSMUA_Achr10P...	Banana	nucleus	12.81	19.12
GSMUA_Achr3P01720_001	Banana	mitochondrion	11.88	19.11
GSMUA_Achr10P...	Banana	mitochondrion	12.5	19.06
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	12.5	18.66
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	12.81	16.73
Solyc06g062680.1.1	Tomato	cytosol	11.57	14.12
GSMUA_Achr6P09470_001	Banana	nucleus	2.47	10.88

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSMUA_Achr8G24250_001
EnsemblPlants:GSMUA_Achr8P24250_001	EnsemblPlants:GSMUA_Achr8T24250_001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M0TT78
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI000295FC5B	SEG:seg	:	:	:

Description

Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G24250_001]

Coordinates

chr8:-:28499812..28511718

Molecular Weight (calculated)

71088.9 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.443

Length

648 amino acids

Sequence
(BLAST)

001: MSPRSNILVP VSVSQNPKNQ RRFVVVVGEE RERKNKKKKV ISGSQDGAGS DAPAGAERDV SNDGGGVAGS GGNQFPSTSL YVGDFQASVT ETQVYDLNPV
101: NATTALEVLN FMPLNNKPIR ILDSNRDPSM HRNGAANIFV KNLDKAICNG QLFDIFSAFG RIVSCTIAKD ASGQSKGYGF VQFEQEEAAQ NAINEINGML
201: LNDKPVFVGP FIRKKERQNS LDKTKFSNVF VKNLSESTTN EDLENIFGEY GKITSAIVMR EEDGKSKCFG FVNFENPDDA ARAVQELNEQ KFDDKEWYVG
301: KALKKSEREL ALRKSYNQSA RNTVDRDQGL NLYLKNLDDS VGDDELKELF SDFGTITSCK IMRNPDGISK GFGFVAFSAP EEANRALEDM KGKMVRGKPL
401: YVAPAQRKED RRASFQAHFS QVRPVAMGLG PSVGPRVSIY PPSAPGLGQQ IFYGQPPPNL IPPQPGFRFQ PQLIPGVQPA EAPMPNFLPA PVQQRRKVHQ
501: PLTLQQVLDH LACKLQLVES RKSTRMVPKF HVHSYPPGTP GAVGGMLHPN EMGGLPMQDV AVPQPIPIAA LPSALANAPP EQQRLMLGDS LYALVKQLEP
601: VDTAKVTGML LEMDQTEVLH LLESPDALRA KVAEAMEILR SVAQQQQG

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.