Factsheet for Bra034603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004795.1-P
Bra032775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Bra004795.1-P	AT2G43970.1	21798944
AT4G34110.1	Bra032775.1-P	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51957	Canola	cytosol, plastid	99.84	99.84
Bra011488.1-P	Field mustard	cytosol, plastid	88.69	89.56
AT4G34110.1	Thale cress	cytosol	89.34	87.92
Bra013104.1-P	Field mustard	cytosol	78.51	78.9
Bra015220.1-P	Field mustard	cytosol	72.54	77.68
KRH70673	Soybean	nucleus	74.64	71.3
KRH50336	Soybean	cytosol	74.8	71.12
Bra018797.1-P	Field mustard	cytosol	73.99	70.14
Solyc01g107870.2.1	Tomato	extracellular	72.54	69.83
PGSC0003DMT400066245	Potato	extracellular	72.54	69.83
Bra039841.1-P	Field mustard	cytosol	23.91	69.48
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	64.94	65.79
TraesCS2D01G358000.1	Wheat	cytosol	68.5	63.86
GSMUA_Achr9P00990_001	Banana	cytosol	67.04	63.75
TraesCS2B01G378400.1	Wheat	nucleus	68.34	63.61
TraesCS2A01G359000.1	Wheat	cytosol	68.34	63.61
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	66.24	62.88
GSMUA_Achr4P09890_001	Banana	cytosol	66.24	62.88
GSMUA_AchrUn_...	Banana	cytosol	66.07	62.73
Os04t0504800-01	Rice	plasma membrane	66.4	62.37
Zm00001d025801_P005	Maize	cytosol, plastid	65.43	62.12
EES12460	Sorghum	plastid	66.56	62.05
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	66.07	61.97
Os09t0115400-01	Rice	nucleus	65.91	61.63
TraesCS5B01G159400.1	Wheat	cytosol	64.46	61.29
TraesCS5A01G161800.2	Wheat	nucleus	64.3	61.14
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.3	61.14
TraesCS7D01G287900.1	Wheat	cytosol	63.0	61.13
Zm00001d019824_P004	Maize	cytosol	64.62	60.98
KXG35258	Sorghum	cytosol	64.62	60.98
GSMUA_Achr4P20270_001	Banana	cytosol	63.0	60.65
Zm00001d005276_P007	Maize	cytosol	63.97	60.55
Bra032172.1-P	Field mustard	cytosol	62.84	60.4
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	60.58	59.9
TraesCS7A01G288700.1	Wheat	nucleus	63.97	59.82
HORVU5Hr1G050560.1	Barley	plastid	64.46	56.84
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	71.73	56.42
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	64.14	55.45
TraesCS7B01G182800.3	Wheat	cytosol	59.45	54.52
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.47	51.08
Bra016371.1-P	Field mustard	plastid	47.98	49.92
Bra003915.1-P	Field mustard	cytosol	50.08	47.84
Bra007984.1-P	Field mustard	plastid	47.82	47.44
Bra022413.1-P	Field mustard	cytosol	33.93	47.09
Bra016118.1-P	Field mustard	plastid	51.7	46.78
GSMUA_Achr7P05430_001	Banana	nucleus	65.75	45.02
Bra034301.1-P	Field mustard	mitochondrion	7.59	42.34
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	27.95	33.14
Bra027446.1-P	Field mustard	cytosol	14.54	28.12
Bra037217.1-P	Field mustard	nucleus	16.96	27.56
Bra039603.1-P	Field mustard	nucleus	16.16	27.47
Bra002230.1-P	Field mustard	nucleus	17.61	26.01
Bra002947.1-P	Field mustard	nucleus	15.99	25.0
Bra006502.1-P	Field mustard	nucleus	17.29	24.88
Bra031774.1-P	Field mustard	nucleus	15.67	24.62
Bra019078.1-P	Field mustard	nucleus	15.99	24.03
Bra030908.1-P	Field mustard	nucleus	15.83	23.39
Bra018813.1-P	Field mustard	mitochondrion, nucleus	14.7	23.33
Bra037962.1-P	Field mustard	nucleus	15.67	23.04
Bra030985.1-P	Field mustard	mitochondrion, nucleus	15.51	22.97
Bra010418.1-P	Field mustard	nucleus	13.89	22.75
Bra001735.1-P	Field mustard	nucleus	14.22	21.36
Bra026387.1-P	Field mustard	nucleus	13.41	21.12
Bra022389.1-P	Field mustard	nucleus	14.38	20.89
Bra040663.1-P	Field mustard	nucleus	12.12	20.16
Bra037538.1-P	Field mustard	nucleus	12.28	18.86
Bra014216.1-P	Field mustard	nucleus	12.28	13.29

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra034603	EnsemblPlants:Bra034603.1	EnsemblPlants:Bra034603.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M4F0K8	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002546586	SEG:seg	:	:

Description

AT4G34110 (E=4e-269) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor

Coordinates

chrA08:-:12575215..12577939

Molecular Weight (calculated)

67608.5 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.499

Length

619 amino acids

Sequence
(BLAST)

001: MAQVQTANGS SAAAQAPAQI GTTSLYVGDL DLNVTDSQLF EAFSQMGQVV SVRVCRDLAT RKSLGYGYVN FANPQDAARA IQEMNFMPLY GKPIRVMYSH
101: RDPSVRRSGA GNIFIKNLDL AIDHKALHDT FSTFGNIVSC KVAVDASGQS KGYGFVQYAV EESAQKAIEK LNGMLLNDKQ VYVGPFLRRQ ERDSSANKTK
201: FTNVYVKNLG ESTTDDDLKK AFSEYGKITS AVVMKDGEGK SKGFGFVNFE NADDAARAVE ALNGHKFDDK EWYVGRAQKK SERETELRVR YEQNLKEAAE
301: KFQSSNLYVK NLDPSISDEK LKEIFSPFGT VTSCKVMRDP SGISKGSGFV AFSTPEEATE AMSQLSGKMV ESKPLYVAIA QKKEDRRVRL QAQFSQPRPV
401: AMPPSAGPRM PMFPPGGPGI GQQMFYGQAP PTMIPPQPGY GYQQQLVPGM RPGGGHGPNY FMPMVQPHQQ RPGGGGRRPG GIQQFQQQPP MMQHQMHPRG
501: RNIRYSQGRG VSGGDVPPYD MGNNNMPLPI GTLASNLANA SPEQQRTMLG ENLYPLVEKL EAESAAKVTG MLLEMDQTEV LHLLESPEAL EAKVAEAMDV
601: LRSVAAGGAA EQLASLNLS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.