Factsheet for Bra039195.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23350.1	Bra006453.1-P	AT4G24840.1	21798944
AT2G23350.1	Bra013840.1-P	AT4G24840.1	21798944
AT2G23350.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46079	Canola	nucleus	98.88	98.41
Bra032172.1-P	Field mustard	cytosol	83.55	81.21
AT2G23350.1	Thale cress	nucleus	80.83	76.44
Bra011488.1-P	Field mustard	cytosol, plastid	59.42	60.69
Bra034603.1-P	Field mustard	cytosol, plastid	59.9	60.58
Bra013104.1-P	Field mustard	cytosol	58.95	59.9
Bra018797.1-P	Field mustard	cytosol	58.31	55.9
Bra015220.1-P	Field mustard	cytosol	51.44	55.71
Bra016371.1-P	Field mustard	plastid	45.05	47.4
Bra039841.1-P	Field mustard	cytosol	15.97	46.95
Bra003915.1-P	Field mustard	cytosol	46.96	45.37
Bra016118.1-P	Field mustard	plastid	49.04	44.88
Bra007984.1-P	Field mustard	plastid	43.45	43.59
Bra034301.1-P	Field mustard	mitochondrion	7.51	42.34
Bra022413.1-P	Field mustard	cytosol	29.87	41.93
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	26.04	31.23
Bra037217.1-P	Field mustard	nucleus	16.93	27.82
Bra027446.1-P	Field mustard	cytosol	14.06	27.5
Bra039603.1-P	Field mustard	nucleus	15.81	27.2
Bra002947.1-P	Field mustard	nucleus	15.02	23.74
Bra019078.1-P	Field mustard	nucleus	15.18	23.06
Bra031774.1-P	Field mustard	nucleus	14.22	22.59
Bra010418.1-P	Field mustard	nucleus	13.58	22.49
Bra030908.1-P	Field mustard	nucleus	15.02	22.43
Bra002230.1-P	Field mustard	nucleus	14.86	22.2
Bra030985.1-P	Field mustard	mitochondrion, nucleus	14.7	22.01
Bra037962.1-P	Field mustard	nucleus	14.7	21.85
Bra018813.1-P	Field mustard	mitochondrion, nucleus	13.1	21.03
Bra006502.1-P	Field mustard	nucleus	14.38	20.93
Bra026387.1-P	Field mustard	nucleus	13.1	20.87
Bra001735.1-P	Field mustard	nucleus	13.26	20.15
Bra022389.1-P	Field mustard	nucleus	13.42	19.72
Bra040663.1-P	Field mustard	nucleus	10.7	18.01
Bra037538.1-P	Field mustard	nucleus	11.02	17.12
Bra014216.1-P	Field mustard	nucleus	10.7	11.71

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra039195	EnsemblPlants:Bra039195.1	EnsemblPlants:Bra039195.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M4FDM4
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002542E77
SEG:seg	:	:	:	:	:

Description

AT2G23350 (E=1e-243) PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor

Coordinates

chrA09:-:31577836..31580827

Molecular Weight (calculated)

68222.1 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.436

Length

626 amino acids

Sequence
(BLAST)

001: MAQAPPPSSS PPATTVASDG LNLGSMCSLY IGDLDFSVTD SQLYDYFTKV CQVVSVRVCR DSATNASLGY GYVNYCNMDD AEKAIKKLNF THLNGKMIRV
101: THSTRDNAAR RSGVGNLFVK NLDKSVDNKT LHDTFSECGN IVSCKVATDH MGQSRGYGFV QFESEDSAKT ATEKLNGRLL NDKEIFVGPF LRKEERESAS
201: DKTKFTNVYV KNLSETTTDD ELKAAFGEYG GISSAVVMKD GDGKSRCFGF VNFEDAGDAA RAVEGLNGKK FDDDKEWYVG KAQKKSEREV ELSRRYEQGV
301: RETAGNGFDG LNLYVKSLDK TVTDEKLREL FAEFGTITSC KVMRDPSGIS KGSGFVALSA ASEPSRVLNE MNGKMVSGKP LYVSLAQRKE ERRATLQAQF
401: SQMRPAFVPG MSPSVPIFPG GGAPGIGQPM FYGQGPPLII PHQGGFGYPP QMVPGMRPGF FGPMMQQGPR PGDGPMRHQP QQPMPFMQPQ MMPRGRGYRY
501: PPGRNMPEDL MPGGRVPLPF DTNGVPLGQH LDADALSSSL ASSLAQASPA QQRTLLGESL YPLVNLIEHV NAAKVTGMLL EMDQTEVLHL LESPEALNAK
601: VSEALDVLRN VNQPSDLLAA LTIHDH

Best Arabidopsis Sequence Match ( AT2G23350.1 )
(BLAST)

001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL

Arabidopsis Description

PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.