Factsheet for Bra039841.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37229	Canola	cytosol	99.53	99.53
Bra015220.1-P	Field mustard	cytosol	73.71	27.16
Bra013104.1-P	Field mustard	cytosol	71.83	24.84
Bra034603.1-P	Field mustard	cytosol, plastid	69.48	23.91
Bra011488.1-P	Field mustard	cytosol, plastid	68.54	23.82
Bra018797.1-P	Field mustard	cytosol	69.48	22.66
Bra032172.1-P	Field mustard	cytosol	51.64	17.08
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	46.95	15.97
Bra016371.1-P	Field mustard	plastid	31.46	11.26
Bra016118.1-P	Field mustard	plastid	36.15	11.26
Bra003915.1-P	Field mustard	cytosol	32.39	10.65
Bra022413.1-P	Field mustard	cytosol	21.6	10.31
Bra007984.1-P	Field mustard	plastid	26.29	8.97
Bra037217.1-P	Field mustard	nucleus	10.8	6.04
Bra039603.1-P	Field mustard	nucleus	9.86	5.77
Bra010418.1-P	Field mustard	nucleus	9.86	5.56
Bra026387.1-P	Field mustard	nucleus	9.86	5.34
Bra019078.1-P	Field mustard	nucleus	9.86	5.1
Bra027446.1-P	Field mustard	cytosol	7.04	4.69
Bra002230.1-P	Field mustard	nucleus	8.92	4.53
Bra006502.1-P	Field mustard	nucleus	8.92	4.42
Bra031774.1-P	Field mustard	nucleus	7.98	4.31
Bra002947.1-P	Field mustard	nucleus	7.98	4.29
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	7.98	3.26
Bra030985.1-P	Field mustard	mitochondrion, nucleus	5.63	2.87
Bra037538.1-P	Field mustard	nucleus	4.69	2.48
Bra030908.1-P	Field mustard	nucleus	4.69	2.39
Bra037962.1-P	Field mustard	nucleus	4.69	2.38
Bra018813.1-P	Field mustard	mitochondrion, nucleus	4.23	2.31
Bra040663.1-P	Field mustard	nucleus	3.29	1.88
TraesCS2D01G593700.1	Wheat	nucleus	7.04	1.55
HORVU2Hr1G122920.2	Barley	nucleus	7.04	1.48
TraesCS2B01G601400.1	Wheat	nucleus	6.57	1.46
Bra001735.1-P	Field mustard	nucleus	2.82	1.46
TraesCS2B01G599000.1	Wheat	nucleus	6.57	1.44
TraesCSU01G037200.1	Wheat	nucleus	6.57	1.44
Bra022389.1-P	Field mustard	nucleus	2.82	1.41
Bra014216.1-P	Field mustard	nucleus	3.76	1.4
Os04t0682400-01	Rice	nucleus	6.57	1.39
TraesCS2D01G593900.1	Wheat	nucleus	6.57	1.37
TraesCSU01G036300.1	Wheat	nucleus	6.1	1.36
TraesCS2D01G594800.1	Wheat	nucleus	6.1	1.36
TraesCS2B01G598800.1	Wheat	nucleus	6.57	1.34
HORVU2Hr1G123110.1	Barley	nucleus, plastid	6.1	1.22
KXG27463	Sorghum	nucleus	6.1	1.21
TraesCSU01G037000.1	Wheat	plastid	6.1	1.16
Bra034301.1-P	Field mustard	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Bra039841.1	EnsemblPlants:Bra039841.1-P	EnsemblPlantsGene:Bra039841	Gene3D:1.10.1900.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR002004	InterPro:PABP-dom	InterPro:PABP_HYD	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	PFAM:PF00658	PFscan:PS51309	SEG:seg	SMART:SM00517	SUPFAM:SSF63570
UniParc:UPI000253EB1C	UniProt:M4FFG7	MapMan:35.1	:	:	:

Description

AT4G34110 (E=1e-049) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor

Coordinates

chrScaffold000178:+:174216..175148

Molecular Weight (calculated)

23099.1 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.334

Length

213 amino acids

Sequence
(BLAST)

001: MPMYPPGGPL VGQQVFYGQA PPTTIPPQPG YGYQQQQMVP GMRPGGAPMH NFFMPMVQQG QQRPGGRPSG GIQQQQQQVS MMHQQQHLVL FLLNHSLCSR
101: GEGRMFRYPQ GRGSGGGPTP DVPGMLPYEM PLRDPVLSQH MLGENLYPLV EQLEAESAAK VTGMLLEMDQ TEVLHLLESP EALKAKVVEA MDVLRSVAAG
201: GAAEQLASLN LAS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.