Factsheet for Bra007984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03685	Canola	nucleus	94.23	91.45
Bra016118.1-P	Field mustard	plastid	78.53	71.64
Bra003915.1-P	Field mustard	cytosol	72.28	69.6
AT1G71770.1	Thale cress	cytosol, plastid	73.56	67.3
Bra016371.1-P	Field mustard	plastid	62.5	65.55
PGSC0003DMT400064531	Potato	cytosol	41.99	49.25
Bra011488.1-P	Field mustard	cytosol, plastid	47.28	48.12
Bra013104.1-P	Field mustard	cytosol	47.28	47.89
Bra034603.1-P	Field mustard	cytosol, plastid	47.44	47.82
VIT_18s0001g02490.t01	Wine grape	plastid	50.32	47.65
KRG91724	Soybean	cytosol	48.72	46.63
Bra018797.1-P	Field mustard	cytosol	47.12	45.02
GSMUA_Achr5P24940_001	Banana	plastid	47.92	44.89
KRH08608	Soybean	endoplasmic reticulum	46.79	43.84
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	43.59	43.45
KRH70233	Soybean	cytosol	43.75	43.4
Bra015220.1-P	Field mustard	cytosol	39.9	43.08
Bra032172.1-P	Field mustard	cytosol	44.39	43.01
Bra034301.1-P	Field mustard	mitochondrion	7.21	40.54
Bra022413.1-P	Field mustard	cytosol	26.44	37.0
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.32	30.27
Bra039841.1-P	Field mustard	cytosol	8.97	26.29
Bra039603.1-P	Field mustard	nucleus	13.62	23.35
Bra037217.1-P	Field mustard	nucleus	13.94	22.83
Bra027446.1-P	Field mustard	cytosol	11.54	22.5
Bra002947.1-P	Field mustard	nucleus	14.26	22.47
Bra019078.1-P	Field mustard	nucleus	14.1	21.36
Bra018813.1-P	Field mustard	mitochondrion, nucleus	13.3	21.28
Bra002230.1-P	Field mustard	nucleus	14.26	21.24
Bra006502.1-P	Field mustard	nucleus	14.1	20.47
Bra031774.1-P	Field mustard	nucleus	12.82	20.3
Bra022389.1-P	Field mustard	nucleus	13.78	20.19
Bra010418.1-P	Field mustard	nucleus	12.18	20.11
Bra001735.1-P	Field mustard	nucleus	12.98	19.66
Bra026387.1-P	Field mustard	nucleus	12.18	19.34
Bra030908.1-P	Field mustard	nucleus	12.66	18.85
Bra037962.1-P	Field mustard	nucleus	12.66	18.76
Bra037538.1-P	Field mustard	nucleus	12.02	18.61
Bra030985.1-P	Field mustard	mitochondrion, nucleus	12.18	18.18
Bra040663.1-P	Field mustard	nucleus	10.58	17.74
Bra014216.1-P	Field mustard	nucleus	11.22	12.24

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra007984	EnsemblPlants:Bra007984.1	EnsemblPlants:Bra007984.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M4CUT9	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002546E09	SEG:seg	:	:

Description

AT1G71770 (E=7e-201) PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor

Coordinates

chrA02:-:12277539..12280023

Molecular Weight (calculated)

69223.1 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.506

Length

624 amino acids

Sequence
(BLAST)

001: MAAASGTAPT TAMVDQASNQ PAVPAVTQLA AAAAPAVEAL QAHPNSSLCV GDLDKSVNEA HLLNLFNQVA PVQTVRVCRD LSHRSLGYAY VNFANPNDAM
101: RAMDTLNYTP IKDRPIRIMR SNRDPSTRLS GKGNVFIKNL DVSIDNKDLY DTFSTFGTIL SCKVEMTLSG RSRGYGFVQF EKVETAQAAI EKLNGMLLND
201: KKVFVGHFVR HQDRTRSENR ALPRFTNVYV KNLPKEIDDD KLKKTFEKYG DISSAVVMKD ESGNSKCFGF VNYQRSEDAA VAVEKMNGTS LGENVLFVGK
301: AQKKSEREEE LKRKHEQEKL NRFEKLEGSN LYVKNLDDSV DDEKLKEMFS EYGNVTSSKV MMNSGGLSRG FGFVAYSLPE EASKAMNDMS GKKIGKKPLY
401: VALAQRKEER RNYLQTKFSQ MRPNGTMTPI PMPGFHQHPS GGAMAGPPHH QMYIGQNGQG LMPSQPMGYG YQLQLMPRPR SGLADFVMPY PLHRQNQHGP
501: WAGFRRGATN MQQQHFQQQQ MHLQSLKMLL KPHRSHHHSP ISKLTSALAL ASPAKHSQML GEQLFPLVEK QEPVHTAKVT GMLLQMDQAE ILHLLEAPEA
601: LKTKVSEALI ALGLSANSPA VSSA

Best Arabidopsis Sequence Match ( AT1G71770.2 )
(BLAST)

001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE

Arabidopsis Description

PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.