Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22760.1 | KRH16959 | AT3G49580.1 | 21798944 |
| AT1G22760.1 | KRH53667 | AT3G49580.1 | 21798944 |
| AT1G22760.1 | KRH64261 | AT3G49580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70233 | Soybean | cytosol | 79.13 | 83.78 |
| KRG91724 | Soybean | cytosol | 71.47 | 73.01 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 65.47 | 66.16 |
| PGSC0003DMT400064531 | Potato | cytosol | 49.25 | 61.65 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 57.36 | 57.36 |
| KRH15385 | Soybean | nucleus | 56.01 | 57.21 |
| KRH50336 | Soybean | cytosol | 55.41 | 56.68 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 55.41 | 56.42 |
| KRH70673 | Soybean | nucleus | 54.65 | 56.17 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 51.35 | 54.29 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 50.6 | 53.49 |
| Bra016371.1-P | Field mustard | plastid | 45.8 | 51.26 |
| CDY41472 | Canola | cytosol, plastid | 47.75 | 49.61 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 48.65 | 49.09 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.6 | 48.92 |
| Bra003915.1-P | Field mustard | cytosol | 47.6 | 48.92 |
| CDX96344 | Canola | plastid | 50.0 | 48.68 |
| CDX72826 | Canola | plastid | 50.0 | 48.68 |
| Bra016118.1-P | Field mustard | plastid | 50.0 | 48.68 |
| CDY36684 | Canola | plastid | 48.5 | 48.57 |
| CDY37935 | Canola | nucleus | 47.3 | 48.39 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 48.95 | 47.8 |
| CDY03685 | Canola | nucleus | 45.8 | 47.43 |
| Bra007984.1-P | Field mustard | plastid | 43.84 | 46.79 |
| KRH32613 | Soybean | cytosol | 31.98 | 43.56 |
| KRH19986 | Soybean | cytosol | 31.08 | 41.82 |
| KRH67800 | Soybean | cytosol | 38.89 | 40.98 |
| KRG96088 | Soybean | cytosol | 38.44 | 40.25 |
| KRH36396 | Soybean | endoplasmic reticulum | 14.86 | 27.12 |
| KRH27525 | Soybean | nucleus | 14.71 | 26.92 |
| KRH24702 | Soybean | nucleus | 15.02 | 24.94 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 10.96 | 24.83 |
| KRH29709 | Soybean | cytosol | 14.86 | 24.69 |
| KRH23136 | Soybean | cytosol | 15.32 | 24.34 |
| KRH61258 | Soybean | nucleus | 14.56 | 23.72 |
| KRH51956 | Soybean | nucleus | 14.11 | 22.87 |
| KRH05723 | Soybean | nucleus | 14.11 | 22.76 |
| KRH11417 | Soybean | nucleus | 13.81 | 22.38 |
| KRH20867 | Soybean | nucleus | 13.66 | 22.25 |
| KRH71168 | Soybean | nucleus | 14.11 | 21.81 |
| KRH51075 | Soybean | endoplasmic reticulum | 12.91 | 21.66 |
| KRH15315 | Soybean | nucleus | 13.81 | 21.65 |
| KRH02082 | Soybean | nucleus | 13.06 | 21.64 |
| KRH50251 | Soybean | nucleus | 13.96 | 21.58 |
| KRH19347 | Soybean | mitochondrion, nucleus | 12.91 | 20.98 |
| KRH06218 | Soybean | nucleus | 13.06 | 20.91 |
| KRH47641 | Soybean | nucleus | 13.06 | 20.62 |
| KRH02581 | Soybean | mitochondrion | 12.76 | 20.58 |
| KRH61952 | Soybean | mitochondrion | 12.91 | 20.24 |
| KRH52613 | Soybean | nucleus | 13.06 | 20.0 |
Protein Annotations
| Gene3D:1.10.1900.10 | EntrezGene:100808877 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EMBL:ACUP02010183 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_16G160800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | UniProt:I1MP18 | InterPro:IPR000504 | InterPro:IPR002004 |
| InterPro:IPR012677 | EnsemblPlants:KRH08608 | ProteinID:KRH08608 | ProteinID:KRH08608.1 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI00023D75DD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:32004157..32008804
Molecular Weight (calculated)
73196.0 Da
IEP (calculated)
6.665
GRAVY (calculated)
-0.393
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAMISAPA VAMRVVVPAL NGVQSGNASL YVGDLERNVD EAQLFELFGQ VGQVVSIRVC RDLTMRSLGY AYVNFVNPQD AANAMEHLNF TPLNGKSIRV
101: MFSNRDPSIR KSGYANVFIK NLDISIDNKA LHDTFSAFGF VLSSKVAVDN NGQSKGYGFV QFDNEESAQN AIKKLNGMLI NDKKVYVGLF VRRQARAQVN
201: ESPKFTNVYV KNFSETYTDE DLKQLFSTYG PITSVVVMKD TDGKSRCFGF VNFESPDSAV AAIERLNGTA VNDDKVLYVG RAQRKAEREA ELKARFERER
301: MRKYEKLQGA NLYVKNLDYS INEENLKELF SKFGTITSCK VMLEPNGHSK GYGFVAFSTP EEGNKALNEM NGKMIGRMPL YVAVAQRKEE RKALLQAQFS
401: QMQALGAITP FHGGIPGYHP GAPSLSPQQL YFGQGPNGLV PPQPTGYGFQ QQLLPNIHPG VAPNFFMPYH PQRQAPPSQR RDPRRFGNLQ QVHHNQMLHP
501: NSNQGFRYME NGRNGMDPSV IPHGMGGPMM PLPFDGSGIS AVHTYNQYHA GASSNTLASA LASATPENQH LMLGEHLYPL VDGLTANHQQ TAKVTGMLLE
601: MDQSEVIHLM ESPEDLKIKV SEAMLALREA APGSEEVAGS EEVGGSEEVG GSEEVGDQLG SLSLNE
101: MFSNRDPSIR KSGYANVFIK NLDISIDNKA LHDTFSAFGF VLSSKVAVDN NGQSKGYGFV QFDNEESAQN AIKKLNGMLI NDKKVYVGLF VRRQARAQVN
201: ESPKFTNVYV KNFSETYTDE DLKQLFSTYG PITSVVVMKD TDGKSRCFGF VNFESPDSAV AAIERLNGTA VNDDKVLYVG RAQRKAEREA ELKARFERER
301: MRKYEKLQGA NLYVKNLDYS INEENLKELF SKFGTITSCK VMLEPNGHSK GYGFVAFSTP EEGNKALNEM NGKMIGRMPL YVAVAQRKEE RKALLQAQFS
401: QMQALGAITP FHGGIPGYHP GAPSLSPQQL YFGQGPNGLV PPQPTGYGFQ QQLLPNIHPG VAPNFFMPYH PQRQAPPSQR RDPRRFGNLQ QVHHNQMLHP
501: NSNQGFRYME NGRNGMDPSV IPHGMGGPMM PLPFDGSGIS AVHTYNQYHA GASSNTLASA LASATPENQH LMLGEHLYPL VDGLTANHQQ TAKVTGMLLE
601: MDQSEVIHLM ESPEDLKIKV SEAMLALREA APGSEEVAGS EEVGGSEEVG GSEEVGDQLG SLSLNE
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
Arabidopsis Description
PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.