Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27525 | Soybean | nucleus | 96.16 | 96.43 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 84.11 | 82.31 |
| Os10t0457000-01 | Rice | nucleus | 76.44 | 78.59 |
| Solyc03g118800.2.1 | Tomato | nucleus | 77.26 | 77.47 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 77.53 | 77.32 |
| PGSC0003DMT400023075 | Potato | nucleus | 76.44 | 76.86 |
| PGSC0003DMT400014744 | Potato | nucleus | 76.44 | 76.65 |
| EER94133 | Sorghum | nucleus | 73.97 | 76.06 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 73.97 | 75.63 |
| Zm00001d032807_P001 | Maize | nucleus | 73.15 | 74.37 |
| AT2G18510.1 | Thale cress | nucleus | 73.42 | 73.83 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 73.97 | 73.37 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 73.7 | 73.1 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 73.42 | 72.83 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 73.15 | 72.55 |
| CDY66740 | Canola | nucleus | 74.25 | 71.13 |
| Bra039603.1-P | Field mustard | nucleus | 70.68 | 70.88 |
| CDY43894 | Canola | nucleus | 70.68 | 70.88 |
| Bra037217.1-P | Field mustard | nucleus | 73.97 | 70.87 |
| CDY67617 | Canola | nucleus | 73.97 | 70.87 |
| CDY59539 | Canola | nucleus | 70.96 | 70.77 |
| KRH19986 | Soybean | cytosol | 24.11 | 17.78 |
| KRH32613 | Soybean | cytosol | 23.29 | 17.38 |
| KRH19347 | Soybean | mitochondrion, nucleus | 19.45 | 17.32 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 29.32 | 16.98 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 30.41 | 16.97 |
| KRH02581 | Soybean | mitochondrion | 19.18 | 16.95 |
| KRH06218 | Soybean | nucleus | 19.18 | 16.83 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 29.04 | 16.83 |
| KRH70673 | Soybean | nucleus | 29.86 | 16.82 |
| KRH15385 | Soybean | nucleus | 29.86 | 16.72 |
| KRH50336 | Soybean | cytosol | 29.59 | 16.59 |
| KRH47641 | Soybean | nucleus | 19.18 | 16.59 |
| KRH52613 | Soybean | nucleus | 18.9 | 15.86 |
| KRH61952 | Soybean | mitochondrion | 18.36 | 15.76 |
| KRH29709 | Soybean | cytosol | 17.26 | 15.71 |
| KRH20867 | Soybean | nucleus | 17.53 | 15.65 |
| KRH51075 | Soybean | endoplasmic reticulum | 16.99 | 15.62 |
| KRH11417 | Soybean | nucleus | 17.53 | 15.57 |
| KRH24702 | Soybean | nucleus | 16.99 | 15.46 |
| KRH02082 | Soybean | nucleus | 16.99 | 15.42 |
| KRH51956 | Soybean | nucleus | 17.26 | 15.33 |
| KRG91724 | Soybean | cytosol | 27.12 | 15.18 |
| KRH61258 | Soybean | nucleus | 16.99 | 15.16 |
| KRH08608 | Soybean | endoplasmic reticulum | 27.12 | 14.86 |
| KRH23136 | Soybean | cytosol | 16.99 | 14.8 |
| KRH05723 | Soybean | nucleus | 16.44 | 14.53 |
| KRH70233 | Soybean | cytosol | 24.93 | 14.47 |
| KRH71168 | Soybean | nucleus | 16.71 | 14.15 |
| KRH50251 | Soybean | nucleus | 16.71 | 14.15 |
| KRH67800 | Soybean | cytosol | 24.38 | 14.08 |
| KRG96088 | Soybean | cytosol | 24.38 | 13.99 |
| KRH15315 | Soybean | nucleus | 15.89 | 13.65 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 7.4 | 9.18 |
Protein Annotations
| EntrezGene:100791039 | MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | EMBL:ACUP02005375 | EnsemblPlantsGene:GLYMA_09G001000 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1KZQ2 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH36396 | ProteinID:KRH36396 | ProteinID:KRH36396.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR01217 |
| PFscan:PS50102 | PANTHER:PTHR44799 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002339197 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:+:80761..84789
Molecular Weight (calculated)
39601.3 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.549
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHAAE RNQDATAYVG NLDPQISEEL LWELFVQAGP VVNVYVPKDR VTNQHQGYGF VEFRSEEDAD YAIKVLNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPDT GNSRGFGFIS YDSFEASDSA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLAAS NPTTQKSRPH TLFASGPPTL PSVPQANGVA PVPPRPFANG VAPPAIPALR PPPPQAAAFQ PMPVPGQPTW HQQQPGQTLL PPAMPPPPQV
301: QQFRPPHPGM QQMPPPPQAP PRPLPPPSVM ASQPPPVWRL PPPQQQGGRP LPYPQSGMPP PPPPQ
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPDT GNSRGFGFIS YDSFEASDSA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLAAS NPTTQKSRPH TLFASGPPTL PSVPQANGVA PVPPRPFANG VAPPAIPALR PPPPQAAAFQ PMPVPGQPTW HQQQPGQTLL PPAMPPPPQV
301: QQFRPPHPGM QQMPPPPQAP PRPLPPPSVM ASQPPPVWRL PPPQQQGGRP LPYPQSGMPP PPPPQ
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.