Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36396 | Soybean | endoplasmic reticulum | 82.31 | 84.11 |
| KRH27525 | Soybean | nucleus | 81.23 | 83.24 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 80.7 | 82.24 |
| PGSC0003DMT400023075 | Potato | nucleus | 79.62 | 81.82 |
| Solyc03g118800.2.1 | Tomato | nucleus | 79.09 | 81.04 |
| PGSC0003DMT400014744 | Potato | nucleus | 78.82 | 80.77 |
| Os10t0457000-01 | Rice | nucleus | 75.87 | 79.72 |
| EER94133 | Sorghum | nucleus | 74.53 | 78.31 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 73.99 | 77.31 |
| Zm00001d032807_P001 | Maize | nucleus | 73.46 | 76.32 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 75.07 | 76.09 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 74.53 | 75.54 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 74.26 | 75.27 |
| AT2G18510.1 | Thale cress | nucleus | 73.19 | 75.21 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 73.99 | 75.0 |
| CDY43894 | Canola | nucleus | 71.85 | 73.63 |
| Bra039603.1-P | Field mustard | nucleus | 71.85 | 73.63 |
| CDY59539 | Canola | nucleus | 72.12 | 73.5 |
| CDY66740 | Canola | nucleus | 74.8 | 73.23 |
| Bra037217.1-P | Field mustard | nucleus | 74.53 | 72.97 |
| CDY67617 | Canola | nucleus | 74.53 | 72.97 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 21.18 | 18.72 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 23.59 | 18.49 |
| VIT_04s0008g02930.t01 | Wine grape | nucleus | 19.57 | 18.39 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 31.1 | 18.12 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 31.37 | 17.89 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 19.57 | 17.38 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 18.23 | 16.27 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 27.35 | 15.48 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 31.37 | 14.87 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 16.35 | 14.73 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 17.16 | 14.38 |
| VIT_08s0007g04380.t01 | Wine grape | cytosol | 24.4 | 14.35 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 17.43 | 14.04 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 4.02 | 12.0 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 3.49 | 8.9 |
| VIT_18s0001g10220.t01 | Wine grape | cytosol | 2.14 | 8.0 |
| VIT_18s0001g10210.t01 | Wine grape | cytosol | 1.07 | 6.35 |
Protein Annotations
| EntrezGene:100251324 | wikigene:100251324 | MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | ProteinID:CCB44466 | ProteinID:CCB44466.1 |
| UniProt:F6GWY0 | EMBL:FN594959 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100251324 | wikigene:LOC100251324 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PRINTS:PR01217 | PFscan:PS50102 | PANTHER:PTHR44799 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 |
| InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:TC64971 | UniParc:UPI00015CB0A7 | ArrayExpress:VIT_04s0023g01470 |
| EnsemblPlantsGene:VIT_04s0023g01470 | EnsemblPlants:VIT_04s0023g01470.t01 | unigene:Vvi.12415 | RefSeq:XP_002271291 | RefSeq:XP_002271291.1 | SEG:seg |
Description
No Description!
Coordinates
chr4:+:18012582..18021992
Molecular Weight (calculated)
40181.3 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.495
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQDATAYVG NLDPQVTEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKVLNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFVGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPDT GNSRGFGFVS YDSFEASDAA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLAAS NPSAPKSRPH TLFASGPPTL PNVPQANGNM GAPMPPRPFA NGVVPPVPIP AMRPPPPQSG AFPPMQLAGP PSWQGQPQQP GQPMQPPMMP
301: PPPLQQFRPP PPSMPPPPQQ VMQALSRPPP PPALMGGPPP VWRPPPPPQQ LAGRPPTMLQ MSMPPPPPPP AAG
101: ASQDKKSLDV GANLFVGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPDT GNSRGFGFVS YDSFEASDAA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLAAS NPSAPKSRPH TLFASGPPTL PNVPQANGNM GAPMPPRPFA NGVVPPVPIP AMRPPPPQSG AFPPMQLAGP PSWQGQPQQP GQPMQPPMMP
301: PPPLQQFRPP PPSMPPPPQQ VMQALSRPPP PPALMGGPPP VWRPPPPPQQ LAGRPPTMLQ MSMPPPPPPP AAG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.