Factsheet for VIT_19s0090g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0043g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27000.1	VIT_04s0043g00340.t01	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064510.2.1	Tomato	plastid	62.63	70.73
PGSC0003DMT400057203	Potato	cytosol	61.56	70.72
AT4G27000.1	Thale cress	nucleus	59.61	66.51
CDX89287	Canola	nucleus	59.18	66.18
Bra019078.1-P	Field mustard	nucleus	58.53	65.78
CDY29263	Canola	nucleus	58.96	65.16
CDY46671	Canola	nucleus	59.61	64.34
CDY14290	Canola	nucleus	57.67	64.03
CDX92786	Canola	mitochondrion, nucleus, peroxisome	58.32	63.38
Bra010418.1-P	Field mustard	nucleus	51.62	63.23
CDY66423	Canola	nucleus	58.1	63.15
Bra002947.1-P	Field mustard	nucleus	53.35	62.37
AT5G54900.1	Thale cress	nucleus	51.84	62.02
CDY17286	Canola	nucleus	54.0	61.73
Bra026387.1-P	Field mustard	nucleus	51.84	61.07
CDY19874	Canola	nucleus	54.43	60.14
VIT_03s0063g00850.t01	Wine grape	nucleus	48.6	54.35
VIT_18s0001g11080.t01	Wine grape	nucleus	48.81	54.07
VIT_06s0004g02040.t01	Wine grape	nucleus	46.65	48.54
Zm00001d021149_P001	Maize	cytosol	16.63	46.67
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	26.35	28.91
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	25.49	28.1
VIT_04s0008g02930.t01	Wine grape	nucleus	22.25	25.94
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	6.05	19.18
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	17.93	17.44
VIT_04s0023g01470.t01	Wine grape	nucleus	14.04	17.43
VIT_07s0031g00210.t01	Wine grape	cytosol	23.11	16.36
VIT_18s0001g10170.t01	Wine grape	cytosol	21.81	15.78
VIT_18s0001g02490.t01	Wine grape	plastid	20.3	14.26
VIT_08s0007g04380.t01	Wine grape	cytosol	18.57	13.56
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	22.25	13.09
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.94	7.2
VIT_18s0001g10220.t01	Wine grape	cytosol	0.86	4.0
VIT_18s0001g10210.t01	Wine grape	cytosol	0.22	1.59

Protein Annotations

EntrezGene:100250363	wikigene:100250363	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:AM482871	ProteinID:CAN83958
ProteinID:CAN83958.1	ProteinID:CCB50652	ProteinID:CCB50652.1	UniProt:F6HEJ3	EMBL:FN595751	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100250363
wikigene:LOC100250363	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC63572	UniParc:UPI0002109B14
ArrayExpress:VIT_19s0090g00280	EnsemblPlantsGene:VIT_19s0090g00280	EnsemblPlants:VIT_19s0090g00280.t01	RefSeq:XP_002280601	RefSeq:XP_002280601.1	SEG:seg

Description

No Description!

Coordinates

chr19:+:6414000..6422754

Molecular Weight (calculated)

51309.5 Da

IEP (calculated)

5.488

GRAVY (calculated)

-0.646

Length

463 amino acids

Sequence
(BLAST)

001: MMQPAPGVVP PSMQPAPMDQ QQPPQYQQPP PQQQWMMMPP PQQQQQTQPP PAWAQQAPVP PPQAQPQMAP PPQQQQYVAA PQASNPEEIR SLWIGDLQPW
101: MEENYLWGCF SQTGEVVSVK VIRNKQTGQC EGYGFIELAT RAAAERILQT YNGTLMPNSE QNFRLNWATL GAGERRADDT PDYTIFVGDL ASDVTDYVLQ
201: ETFRGHYPSV KGAKVVTDRT TGRSKGYGFV RFGDEGEQLR AMNEMNGMFC STRPMRIGPA ATKKPVGGQQ FQKASFQNTQ GNQGESDPNN TTIFVGGLDS
301: NVTDDYLRQV FSQYGELVHV KIPVGKRCGF VQFANRACAE QALAGLNGTQ LGAQSIRLSW GRSPSNKQAQ PDQAQWNGGY YGYAQGYEAY GYAPPPQDPN
401: MYYGAYPGYG NYQQPQQGKA SMLIKLESPV LSHSAWLDEN CRTLDATCLL VGPDLRKILL ICC

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.