Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009512_P001 | Maize | mitochondrion | 43.03 | 53.79 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 43.03 | 50.0 |
| Zm00001d010739_P001 | Maize | mitochondrion | 31.52 | 41.94 |
| Zm00001d016252_P001 | Maize | nucleus | 60.0 | 26.33 |
| Zm00001d021633_P006 | Maize | nucleus | 61.82 | 21.94 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 33.33 | 20.52 |
| AT5G54900.1 | Thale cress | nucleus | 47.27 | 20.16 |
| Bra010418.1-P | Field mustard | nucleus | 43.64 | 19.05 |
| Zm00001d007929_P002 | Maize | nucleus | 40.61 | 18.66 |
| Zm00001d013812_P001 | Maize | nucleus | 45.45 | 18.47 |
| Bra026387.1-P | Field mustard | nucleus | 43.03 | 18.07 |
| Solyc07g064510.2.1 | Tomato | plastid | 44.85 | 18.05 |
| PGSC0003DMT400057203 | Potato | cytosol | 43.64 | 17.87 |
| AT4G27000.1 | Thale cress | nucleus | 44.24 | 17.59 |
| CDX89287 | Canola | nucleus | 43.64 | 17.39 |
| CDY14290 | Canola | nucleus | 43.64 | 17.27 |
| Bra019078.1-P | Field mustard | nucleus | 43.03 | 17.23 |
| CDY29263 | Canola | nucleus | 43.64 | 17.18 |
| Bra002947.1-P | Field mustard | nucleus | 41.21 | 17.17 |
| Zm00001d006496_P004 | Maize | nucleus | 56.36 | 17.13 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 43.64 | 16.9 |
| CDY17286 | Canola | nucleus | 41.21 | 16.79 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 46.06 | 16.67 |
| CDY66423 | Canola | nucleus | 43.03 | 16.67 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 46.67 | 16.63 |
| Zm00001d026346_P002 | Maize | extracellular | 43.03 | 16.59 |
| CDY46671 | Canola | nucleus | 43.03 | 16.55 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 41.82 | 16.27 |
| CDY19874 | Canola | nucleus | 41.21 | 16.23 |
| Zm00001d020748_P002 | Maize | plasma membrane | 41.21 | 15.7 |
| Zm00001d002244_P003 | Maize | nucleus | 42.42 | 15.62 |
| Zm00001d050838_P001 | Maize | plastid | 40.61 | 15.58 |
| Zm00001d025551_P002 | Maize | plastid | 40.61 | 14.82 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 40.61 | 14.13 |
| Zm00001d026528_P001 | Maize | plastid | 18.79 | 14.09 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 22.42 | 10.36 |
| Zm00001d032807_P001 | Maize | nucleus | 21.82 | 10.03 |
| Zm00001d027869_P002 | Maize | nucleus | 45.45 | 9.83 |
| Zm00001d048824_P004 | Maize | nucleus | 24.85 | 9.17 |
| Zm00001d031525_P004 | Maize | nucleus | 24.85 | 8.8 |
| Zm00001d049759_P003 | Maize | nucleus | 20.0 | 7.21 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 24.24 | 6.13 |
| Zm00001d046487_P001 | Maize | cytosol | 23.64 | 6.07 |
| Zm00001d005276_P007 | Maize | cytosol | 23.64 | 5.96 |
| Zm00001d019824_P004 | Maize | cytosol | 23.64 | 5.95 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 23.03 | 5.83 |
| Zm00001d047790_P001 | Maize | plastid | 24.85 | 5.58 |
| Zm00001d026522_P001 | Maize | nucleus | 3.03 | 2.05 |
Protein Annotations
| EnsemblPlants:Zm00001d021149_P001 | EnsemblPlants:Zm00001d021149_T001 | EnsemblPlantsGene:Zm00001d021149 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONM56394.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0008426378 | UniProt:A0A1D6I8M3 | MapMan:35.1 | : |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr7:-:144128263..144129613
Molecular Weight (calculated)
18332.8 Da
IEP (calculated)
7.661
GRAVY (calculated)
-0.334
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSVVGAIQ RGELREVPDC SRHSAVETEV EGNVPVGGYA VRYNTFFLAR LETSHIISVA LYYYRIYTGD KRGDSGSDHT IFVGDLAHGV TDSMLEDVFR
101: AKYPSVRGAN VVVDRMTGWP KGYGFVRFGD LNEQARAMTE MNGMLLSTRQ MRIGAAVNKK NRDAQ
101: AKYPSVRGAN VVVDRMTGWP KGYGFVRFGD LNEQARAMTE MNGMLLSTRQ MRIGAAVNKK NRDAQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.